RNA id: TU1057944


Basic Information

Item Value
RNA id TU1057944
length 319
lncRNA type intronic
GC content 0.42
exon number 2
gene id G929158
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 82306058 ~ 82306489 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctacacctgttgtattcagcatttcacagtgaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcggcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtcaggtctactacacctgttgtattcagcatttcactgtgaggttctactacacctgttgtattcagcatttcactgtgaggttctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtcaggtctactacacctgttgt

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1057900 lncRNA upstream 8730 82293105 ~ 82297328 (+) False LOC118936827
TU1057906 lncRNA upstream 9212 82293105 ~ 82296846 (+) True LOC118936827
TU1057936 lncRNA upstream 13070 82292569 ~ 82292988 (+) True G929155
TU1057935 lncRNA upstream 15626 82289164 ~ 82290432 (+) True G929154
TU1057926 lncRNA upstream 42027 82262925 ~ 82264031 (+) True G929145
TU1057952 lncRNA downstream 8451 82314940 ~ 82316293 (+) True G929162
TU1057954 lncRNA downstream 11589 82318078 ~ 82318701 (+) True G929164
TU1057919 lncRNA downstream 62789 82369278 ~ 82369651 (+) True G929139
TU1057961 lncRNA downstream 71682 82378171 ~ 82378466 (+) True G929171
TU1057962 lncRNA downstream 79079 82385568 ~ 82386126 (+) True G929172
XM_036934211.1 mRNA upstream 73082 82212448 ~ 82232976 (+) False LOC110510824
XM_036934212.1 mRNA upstream 73084 82212448 ~ 82232974 (+) False LOC110510824
XM_036934209.1 mRNA upstream 73204 82212448 ~ 82232854 (+) False LOC110510824
XM_036934213.1 mRNA upstream 73204 82212448 ~ 82232854 (+) False LOC110510824
XM_036934210.1 mRNA upstream 73204 82213283 ~ 82232854 (+) False LOC110510824
XM_036934223.1 mRNA downstream 10232 82316721 ~ 82392281 (+) False LOC118936828
XM_036934225.1 mRNA downstream 10232 82316721 ~ 82401240 (+) False LOC118936828
XM_036934226.1 mRNA downstream 10232 82316721 ~ 82401240 (+) True LOC118936828
XM_036934228.1 mRNA downstream 420926 82727415 ~ 82738670 (+) True LOC110512972
XR_005034283.1 mRNA downstream 434649 82741138 ~ 82742592 (+) False LOC118936830
TU1057903 other upstream 1776 82291950 ~ 82304282 (+) False LOC118936827
TU1057878 other upstream 90340 82213880 ~ 82215718 (+) True LOC110510824
TU1057776 other upstream 105053 82173465 ~ 82201005 (+) False LOC118936825
TU1057946 other downstream 2314 82308803 ~ 82309572 (+) False G929159
TU1057948 other downstream 2314 82308803 ~ 82309572 (+) True G929159
TU1058175 other downstream 434945 82741434 ~ 82742780 (+) False LOC118936830
TU1058178 other downstream 434945 82741434 ~ 82742780 (+) True LOC118936830
TU1058185 other downstream 455116 82761605 ~ 82762488 (+) True G929305

Expression Profile