RNA id: TU1057948


Basic Information

Item Value
RNA id TU1057948
length 676
RNA type TUCP
GC content 0.47
exon number 3
gene id G929159
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 82308803 ~ 82309572 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aataaacccgccttgccttggcaacagctaatggggatccataataaaccctaatggggatccataataaacccgccttgtcttggcagcagctaatggggatccataataaaccctaatggggatccataataaacccgccttgccttggcagcagctaatggagaCCCATAACAAATCCAGgtgctgccatccaggacctctataccaggcggtgtcagaggaaggtcctaagaATGTACTCCAGCCACACATGGACAGTTTCTCTCTGCTAAcccacggcaagtggtaccgatgcaccaagccTGGAACCAACTTGACCCTGAATAGCTTCTAcacacggggcggcagggtagcctcctggttagaacgttggactagtaaccgaaaggttgcaagatcgaatccccgagctgacaagttaaaaatatgttgttctgcccctgaacaaggcagttaacccactgttcctcggtagGCTGTTacctgtctattatctatcctttacccctacctacagtatactgctgttactgtctattatctatcctttacccctacctacagtatactgctgttactgtctattatctatcctttacccctacctacagtatactgctgttactgtctattatctacctgtatgtacatactgtatctacctcaattacct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1057941 lncRNA upstream 2314 82306058 ~ 82306489 (+) False G929158
TU1057942 lncRNA upstream 2314 82306058 ~ 82306489 (+) False G929158
TU1057943 lncRNA upstream 2314 82306058 ~ 82306489 (+) False G929158
TU1057944 lncRNA upstream 2314 82306058 ~ 82306489 (+) True G929158
TU1057906 lncRNA upstream 11957 82293105 ~ 82296846 (+) True LOC118936827
TU1057952 lncRNA downstream 5368 82314940 ~ 82316293 (+) True G929162
TU1057954 lncRNA downstream 8506 82318078 ~ 82318701 (+) True G929164
TU1057919 lncRNA downstream 59706 82369278 ~ 82369651 (+) True G929139
TU1057961 lncRNA downstream 68599 82378171 ~ 82378466 (+) True G929171
TU1057962 lncRNA downstream 75996 82385568 ~ 82386126 (+) True G929172
XM_036934222.1 mRNA upstream 2078 82261288 ~ 82306725 (+) False LOC118936827
XM_036934220.1 mRNA upstream 2103 82274227 ~ 82306700 (+) False LOC118936827
XM_036934221.1 mRNA upstream 2103 82274227 ~ 82306700 (+) False LOC118936827
XM_036934219.1 mRNA upstream 2103 82274230 ~ 82306700 (+) False LOC118936827
XM_036934211.1 mRNA upstream 75827 82212448 ~ 82232976 (+) False LOC110510824
XM_036934223.1 mRNA downstream 7149 82316721 ~ 82392281 (+) False LOC118936828
XM_036934225.1 mRNA downstream 7149 82316721 ~ 82401240 (+) False LOC118936828
XM_036934226.1 mRNA downstream 7149 82316721 ~ 82401240 (+) True LOC118936828
XM_036934228.1 mRNA downstream 417843 82727415 ~ 82738670 (+) True LOC110512972
XR_005034283.1 mRNA downstream 431566 82741138 ~ 82742592 (+) False LOC118936830
TU1057903 other upstream 4521 82291950 ~ 82304282 (+) False LOC118936827
TU1057878 other upstream 93085 82213880 ~ 82215718 (+) True LOC110510824
TU1057776 other upstream 107798 82173465 ~ 82201005 (+) False LOC118936825
TU1058175 other downstream 431862 82741434 ~ 82742780 (+) False LOC118936830
TU1058178 other downstream 431862 82741434 ~ 82742780 (+) True LOC118936830
TU1058185 other downstream 452033 82761605 ~ 82762488 (+) True G929305
TU1058109 other downstream 483937 82793509 ~ 82798322 (+) True LOC118936832
TU1058236 other downstream 606224 82915796 ~ 82919230 (+) False LOC110512617

Expression Profile