RNA id: TCONS_00038884


Basic Information

Item Value
RNA id TCONS_00038884
length 2245
RNA type mRNA
GC content 0.40
exon number 11
gene id XLOC_019753
representative False

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 35304974 ~ 35325541 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAACAAAGCAAATCTTGTGGTACCCAAAGCAGTCAGCCTGAGCTTGAATGAACTGCCTATTATCTCGTCCACCAGCATGTCAGTTTCGGTTATTATCAAGTGGGGAGGGCAGGAGTACTCCATTAATACGCTGTCCGAGGAAGACACTGTGCTGGATCTGAAACAGTCCATTAAATCGCTCACAGGAGTCCTGCCAGAAAGACAAAAGCTCCTGGGGTTGAAACTGAAAGGTAAACCAGCGGATGATAATGTCAAACTGGGTGACTTGAAGTTGAAGCCCAATACCAAAATTATGATGATGGGCACCCGAGAGGAAAGTCTGGAAGATGTGTTGGCGCCTCCACCAGAAAATGATGATGTTGTCAATGACTTTGACATTGAAGAGGAAGTGACTGAGGTTGAAAACAGAGAGGAGAATTTGGCCAAAATAGCTCGCCGGGTGAAAGATTATAAAGTTGAGGAGTTAAATCCCCCAAGGCCAGGAAAAAGATTGCTTGTTCTAGATATTGATTACACACTCTTTGATCATAAGTCATGTGCAGAGACAGGCCATGAGCTGATGAGACCATTCTTGCACGAGTTTCTTACATCGGCATATGAGGACTTTGATATTGTCATCTGGTCTGCAACAAGTATGAAGTGGATTGATGCTAAAATGAAAGAATTGGGGGTGACGGACAACCCTAACTACAAGATCACCTTCATGTTGGACAGTGCAGCTATGATCACTGTACACACACCTAAAAGAGGAGTCGTAGAGGTGAAGCCTTTGGGAGTCATATGGGGTAAATATAGTGAGTTCTACAACAGAAAGAACACAATCATGTTCGATGACATTGGAAGAAACTTCCTTATGAATCCACAGAATGGACTGAAGATCAGACCTTTCATGAAGGCACATTTAAACCGCGAGAAGGACAAAGAGCTCTACAAACTGTCTCAGTATCTGAAGGAAATCGCTAAACTTGATGACTTCTCAGGTCTTAACCACAAGCACTGGGAAAGGTACCTCTCAAAGAAGCAGAATCAATGACATCTTCAGCACTGAAGAGAAGTtgtgtctcaaaaaaaaaaaaggtttgagtTTGGAAACTCTTGTTCGCAGATCAGCTTCTCTTTGTTTTGCATCCATTATCTTACACGTCTTTATAGTGGGTCGTTACTGgaggatgaaaaaaaaagaaattctagCACTGCTCAAAAACAGTGGTTACCTCAACATGTCAGTAAAAAGCATTCAGGCAAGCATGACGATCCTCTTACCTCACTTCCTGCCTGATCACACTTCTTCCTATAAGTAAACTGGTAATATGGAAATTAGAATTTGTTGTTCATATCTAATTGGAATAGTAGTGCATATGATGTCGTTTTTGTTTTCCCAAATTTTCAGCTTGACGTTCAAAGCTCTTtagagcaatggtctcaaacccaattcctggagggccgcagctctgcatagtttagctccagccaCGTCCACCTGCCTAATAGCACgttgtagtcttgaacacctagattagttagatcagctgtgtttgattagggttggaacagaaccctgcagagctgtggctctccagAAATCAAATTTGAGACCTATGTTTGAGTGTCTTTGTGTTTATGGAAGTTTGGTTCTGCTTtggaatacaaaaataaaacattttttgtctaATTGTTTTATCACTTTGCAGAAAAAAAGCTTCCATACTTAATTATCAATTAATAAAGAGCTTTGAATGCTACAGAATGGTAAACccgtattttttttctcaaaaggaaaaaaaatccgAATTCCAAAGAGAAGTTATTTcaaactgcagaaaaaaaacgaGGTTTATAAGTGAACACGCTTTTTCAGCTTCGTTTCAAATCTCCAAAACGAACAATAAAGGACAGGAGTCATGTTTAcatgcatgttttgttttatcactaaCATAATATGCTAACTGGATGGTGTGATGTAAGTTTGTATGGTCACTTAAATGGTCACATGACTTAAGGGAGATAAATGTGTCATATCAAAGTAGCCtgaccaacttttttttttttatctgtctaGTCATAGCATTGAAGCTTGTCGATATTTCCACCCTCCAGTTTGTGTTTTTTGTCATTAACTCAGTAGATATTATTGTAACCGTATTGCATTTTGTGTAACTGCATTGCAGCCAGTGCTCAAATGTGGGCGTTGGGTTTACTGATGGAACCTTAAAAATGgacatttaaattaaatggttTTACAGTA

Function

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0005634 nucleus cellular_component
GO:0016787 hydrolase activity molecular_function
GO:0004721 phosphoprotein phosphatase activity molecular_function
GO:0004722 protein serine/threonine phosphatase activity molecular_function

KEGG:

id description
ko01009 Protein phosphatases and associated proteins

ZFIN:

id description
ZDB-GENE-040718-3 Predicted to enable protein serine/threonine phosphatase activity. Predicted to be involved in protein dephosphorylation. Predicted to be active in nucleus. Orthologous to human UBLCP1 (ubiquitin like domain containing CTD phosphatase 1).

Ensembl:

ensembl_id ENSDART00000162189

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00039678 lncRNA downstream 1658094 33637162 ~ 33646880 (-) True XLOC_019743
TCONS_00039677 lncRNA downstream 1666333 33637162 ~ 33638641 (-) False XLOC_019743
TCONS_00038863 lncRNA downstream 1827011 33465275 ~ 33477963 (-) True XLOC_019742
TCONS_00039676 lncRNA downstream 2158449 33145252 ~ 33146525 (-) True XLOC_019740
TCONS_00039253 lncRNA downstream 2215301 33058754 ~ 33089673 (-) True XLOC_019737
TCONS_00039679 lncRNA upstream 319997 35645538 ~ 35650096 (-) True XLOC_019755
TCONS_00039680 lncRNA upstream 728943 36054484 ~ 36055407 (-) True XLOC_019757
TCONS_00039254 lncRNA upstream 1061245 36386786 ~ 36395906 (-) True XLOC_019758
TCONS_00039681 lncRNA upstream 2253205 37578746 ~ 37582114 (-) True XLOC_019768
TCONS_00039682 lncRNA upstream 2268810 37594351 ~ 37632708 (-) False XLOC_019769
TCONS_00038882 mRNA downstream 222259 35078766 ~ 35082715 (-) True XLOC_019752
TCONS_00038880 mRNA downstream 332102 34945033 ~ 34972872 (-) False XLOC_019751
TCONS_00038881 mRNA downstream 353709 34947738 ~ 34951265 (-) True XLOC_019751
TCONS_00038878 mRNA downstream 378236 34879268 ~ 34926738 (-) False XLOC_019750
TCONS_00038889 mRNA upstream 56902 35382443 ~ 35419486 (-) False XLOC_019754
TCONS_00038890 mRNA upstream 57034 35382575 ~ 35428039 (-) False XLOC_019754
TCONS_00038891 mRNA upstream 57034 35382575 ~ 35534401 (-) True XLOC_019754
TCONS_00038892 mRNA upstream 326643 35652184 ~ 35853245 (-) False XLOC_019756
TCONS_00038893 mRNA upstream 327618 35653159 ~ 35832548 (-) True XLOC_019756
TCONS_00038875 other downstream 768600 34430460 ~ 34536374 (-) True XLOC_019748
TCONS_00038861 other downstream 2167891 33136948 ~ 33137083 (-) True XLOC_019739
TCONS_00038828 other downstream 3222825 32076707 ~ 32082149 (-) True XLOC_019725
TCONS_00038827 other downstream 3223596 32073529 ~ 32081378 (-) False XLOC_019725
TCONS_00038821 other downstream 3967189 31337670 ~ 31337785 (-) True XLOC_019722
TCONS_00038902 other upstream 1747410 37072951 ~ 37073080 (-) True XLOC_019765
TCONS_00038929 other upstream 2737656 38063197 ~ 38063314 (-) True XLOC_019777
TCONS_00038943 other upstream 3401558 38727099 ~ 38730018 (-) False XLOC_019784
TCONS_00038955 other upstream 3941684 39267225 ~ 39267306 (-) True XLOC_019791
TCONS_00038972 other upstream 4752410 40077951 ~ 40081929 (-) True XLOC_019807

Expression Profile

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