RNA id: XM_036936554.1


Basic Information

Item Value
RNA id XM_036936554.1
length 1466
RNA type mRNA
GC content 0.51
exon number 5
gene id ypel1
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 83873900 ~ 83903039 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTCTTTTTTAGGCAACATATTATATTCTATAAACAGCCTCACCTGCACGTATAATAAGGCATGTAACCTTGTGTGGATCTTGTCGTGATCAGTATGATAATATCTCCCTGTATTTATTTACACATCCGGGTGTTTCTCCACCTCAGCCGCAGCCTCCCCTTATTGGTCGCTGTAGCTGTCTGTCATAATCTGGGTCTGTCCCAGCAGTGACGTTAGACGAGGCTACCACGAACACAAAGACAACAACAAAGACGGACGGAGGAAAAGGACAGCTTTTAGTGATCGCTGCTGCTGGATACCTGACAACATCACTCCTTGACCATTACACAAGCACACTAGAAAGAGGACAACCGTTTCATGATATGAAAAACATTACCATCAAGCACACAAGTCAATATATGTCAAGATTCGCTCTGAGCAGATTCGTTTCAGGTGGTGTAGTTTCCTCGTGGTTGCTGTGTGGAGCCTGCCGCCACACACCCACTCCTCAACAACGACGGCTTTTGCTTGCATCTTCCAGTGCTTCTTCTGTCAGCAAGTTCAGCAGAGCTGCTGCTCGTCCGCCGCTAGCCCGGACGCCGCAGCCCCCGGCACATCAGCCAATCACAGCCCAGAGCCCCGCCCATGTGACATGGTGAAGATGACCAAGTCGAAGACGTTTCAGGCCTACCTGCCCTCGTGTCATCGCACCTACAGCTGTATACACTGTCGGGCACACCTGGCCAACCACGACGAACTCATCTCTAAGtcATTCCAAGGAAGCCAGGGGAGAGCCTACCTCTTTAACTCTGTtgTGAACGTGGGCTGTGGGCCGGCAGAGGAGCGGGTTCTCCTAACAGGTCTACATGCCGTCGCTGACATCTACTGTGAAACCTGTAAAACCACTCTGGGATGGAAATACGAACATGCATTTGAGAGCAGTCAGAAGTACAAGGAGGGGAAGTTCATCATCGAGCTGGCTCACATGATTAAAGACAATGGTTGGGAGTGACATCGCTTCCTGTCTCCGGCCCGTTAATGACCTCTGACCTATCAGAGCTCTGGATCTATCAGACTTCACAGAGCGACAACCAATCACCATCAACCACCCACCGTGCCGCCCCCTCctaacacacgcacaaacacacccacacacacacagtccctgcTGGTTGTGAAACTGAACATGATGCTGTTGAACTGGAGAGATGACTAGCCTATTGGGGGTTGGACCTTCAGTGAAGACCATGTGATCTCACCAGCCAATGACAGACAGCTGGACTTTAATTGGCTCCTCCTTCATCAACCAGGCCCCACCCACCTCACTGGCGTTGGCACTTAGTTACACGGCTGCCATAGCGATGTGAGAGAGAGGATAACATGATAACGTTCTActaccctcttcctcctctgacccgggaggaagaggaggtgttgCAGGAAGGAAGGGGACAGGGTGGcacagtggggggggggtgtttctCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1167231 lncRNA downstream 2137 83873310 ~ 83873797 (-) True G1025595
TU1167227 lncRNA downstream 4605 83870154 ~ 83871329 (-) False G1025593
TU1167228 lncRNA downstream 5462 83870154 ~ 83870472 (-) True G1025593
TU1167263 lncRNA downstream 15002 83860659 ~ 83860932 (-) True G1025620
TU1167262 lncRNA downstream 15863 83859860 ~ 83860071 (-) True G1025619
TU1167292 lncRNA upstream 5866 83906582 ~ 83907246 (-) True G1025642
TU1167294 lncRNA upstream 6684 83907400 ~ 83908226 (-) True G1025643
TU1167296 lncRNA upstream 8637 83909353 ~ 83909706 (-) True G1025644
TU1167297 lncRNA upstream 9100 83909816 ~ 83910315 (-) True G1025645
TU1167275 lncRNA upstream 10558 83911274 ~ 83916203 (-) True G1025630
XR_005034763.1 mRNA downstream 179328 83694680 ~ 83696606 (-) False LOC118937426
XR_005034764.1 mRNA downstream 179409 83694680 ~ 83696525 (-) False LOC118937426
XR_005034765.1 mRNA downstream 179428 83694680 ~ 83696506 (-) False LOC118937426
XM_036936539.1 mRNA downstream 514920 83341427 ~ 83361014 (-) True LOC110536498
XM_036936538.1 mRNA downstream 586985 83064063 ~ 83288949 (-) True LOC110536507
XR_005034767.1 mRNA upstream 14097 83914813 ~ 83919629 (-) False LOC110536511
XR_005034772.1 mRNA upstream 15634 83916350 ~ 83919629 (-) False LOC110536511
XR_005034768.1 mRNA upstream 15635 83916351 ~ 83919629 (-) False LOC110536511
XR_005034769.1 mRNA upstream 15635 83916351 ~ 83919629 (-) False LOC110536511
XR_005034770.1 mRNA upstream 17012 83917728 ~ 83919629 (-) False LOC110536511
TU1167110 other downstream 157326 83716077 ~ 83718608 (-) False G1025498
TU1167109 other downstream 158047 83715683 ~ 83717887 (-) False G1025498
TU1167113 other downstream 158047 83716077 ~ 83717887 (-) False G1025498
TU1167055 other downstream 249144 83621723 ~ 83626790 (-) True G1025467
TU1167071 other downstream 310360 83562302 ~ 83565574 (-) True G1025481
TU1168443 other upstream 1286610 85187326 ~ 85197500 (-) False G1026586
TU1168973 other upstream 1712636 85613352 ~ 85614375 (-) True G1026978

Expression Profile