RNA id: XM_036936558.1


Basic Information

Item Value
RNA id XM_036936558.1
length 1983
RNA type mRNA
GC content 0.53
exon number 8
gene id LOC110535142
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 83922608 ~ 83982640 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCATAGTGTCTCAGTGTAGCTAGCATACCGCAGTCAGCCTGTGTGTACAGCAGCGCAGGAAGACCACTTTATCATACGGAGGACTTCAGAAAGGCTCCCGGTAATAACGTTGTTACAGCGGTGACTTTTCCTTGTGGCCGTGAAGAACGTGTAAAAAGGCAGCCGGTTTTCACAATGGCGACAGCTGCGGTTTCTGCCAGTGGCCCCAACCCCGGAACCGGAGCTGAGTTGGTCCGAGGACAGGCCTTCGATGTCGGGCCCCGGTACCACAATCTGTCGTATATCGGTGAGGGCGCCTACGGAACGGTGTGctctgcGTATTGCCGTGACAACAAGGTCCGCGTGGCGATAAAGAAGATCAGTCCGTTTGAGCACCAGACATACTGCCAGAGGACTCTGAGAGAGATTAAGATCCTGCTGCGCTTCAAACATGAGAACATCATCAGCATCAACGACATCATCCTCACGCCCTCCATCGATCAGATGAAGGACGTCTACATAGTGCAGGACCTGATGGAGACAGACCTGTATAAGCTGCTGAAGACCCAGCGCCTGAGCAACGATCACATCTGTTACTTCCTGTACCAGATCCTGAGAGGCCTGAAGTACATCCATTCTGCCAACGTCCTGCACCGCGACCTCAAACCCTCCAACCTGCTGCTCAATACCACCTGTGATCTAAAGATCTGTGACTTCGGTCTGGCGCGTGTGGCTGACCCAGACCACGACCACACAGGCTTCCTGACAGAGTATGTAGCTACTCGCTGGTACCGGGCGCCTGAGATCATGCTCAACTCCAAGggttACACCAAGTCTATTGATATCTGGTCTGTGGGCTGCATCCTGGCTGAAATGCTCTCCAATAGACCCATCTTCCCCGGGAAGCACTACCTGGACcagctcaaccacatactgggTATCCTAGGGTCTCCTTCCCAGGAGGATCTGAACTGCATCATTAACATCAAGGCCAGGAACTACCTGCTGTCTCTCCCGCTGCGCTGCAAGGTCCCCTGGAACAGCCTCTTCCCCAAAGCCGACTCCAAAGCTCTGGACCTGCTGGATAAGATGTTGACCTTTAACCCCCACAAGAGGATCGAGGTGGAGGCGGCTCTGGCTCACCCTTACCTGGAGCAGTACTACGACCCTACAGATGAGCCTGTAACAGAGACTCCCTTCAAGTTTGCGATGGAGCTTGATGATCTCCCCAAAGAGACCCTGAAGGAGCTGATCTTTGAAGAGACGGCTcgcttcaacacagtctgcaggCCCTAACCCGTACACACAGatcAGACTCTGGACTCCtttcctccacctcttctctccacCTTTCCGACATGTGCTGTGGTTCCTCCTGTCTTCAGCATTTCCTGTATACTTCCTACCTCCCCTAGTCAGTCAAACCACCATGCTCAGGAACAGTGTCAGgaatcaacctctctctctctgctctctctgtctctccctctgcctatGGGGTAAGGGGGCGTCACTTGTTGGCTTATCGTTGAGGAGATGCTTGTCTTGTGTGTTTTAAGCTAAGATCAACAgaagtctgtgtcccaaatggtgccctattccctaatatAGTGTTCTACTtttagaaagtagtgcactatatagggaatagggggccatagggctctggtctaaagtagtgcactatatatggaatagggtgccatttgggacacaggtcTGGCTCGGGAGACACCTGTTCAACCAGCTTTGGTTTATGGTTAAGTCCTCATTGTTACTCCTGGCCCGCGCAGCTGAAGCGGTGGTACACAGTTGTGGGGTTTGTTTTCAAAAGCAGATTTTTTTTCACCTCGCCGGCTCTGGGATTCATACAGCGacctttcaattactggcccaactctcttaaccactaggctacctaacgctctctcctcctcccaacggcccggtctccctctctctctctcctcccaacggcccggtctctctctctctcctcccaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1167280 lncRNA downstream 1305 83919212 ~ 83921303 (-) True LOC110536511
TU1167282 lncRNA downstream 3926 83917409 ~ 83918682 (-) False LOC110536511
TU1167283 lncRNA downstream 3926 83917409 ~ 83918682 (-) False LOC110536511
TU1167275 lncRNA downstream 6405 83911274 ~ 83916203 (-) True G1025630
TU1167297 lncRNA downstream 12293 83909816 ~ 83910315 (-) True G1025645
TU1167358 lncRNA upstream 25255 84007892 ~ 84009482 (-) True G1025693
TU1167373 lncRNA upstream 37609 84020246 ~ 84024491 (-) True G1025701
TU1167349 lncRNA upstream 49135 84031772 ~ 84036310 (-) False G1025684
TU1167348 lncRNA upstream 49677 84032314 ~ 84035752 (-) True G1025684
TU1167350 lncRNA upstream 61137 84043774 ~ 84047257 (-) True G1025685
XR_005034767.1 mRNA downstream 2979 83914813 ~ 83919629 (-) False LOC110536511
XR_005034772.1 mRNA downstream 2979 83916350 ~ 83919629 (-) False LOC110536511
XR_005034768.1 mRNA downstream 2979 83916351 ~ 83919629 (-) False LOC110536511
XR_005034769.1 mRNA downstream 2979 83916351 ~ 83919629 (-) False LOC110536511
XR_005034770.1 mRNA downstream 2979 83917728 ~ 83919629 (-) False LOC110536511
XR_005034773.1 mRNA upstream 62875 84045512 ~ 84084200 (-) False grsf1
XR_005034774.1 mRNA upstream 62875 84045512 ~ 84084200 (-) False grsf1
XR_005034775.1 mRNA upstream 62875 84045512 ~ 84084200 (-) False grsf1
XR_005034776.1 mRNA upstream 62875 84045512 ~ 84084200 (-) False grsf1
XM_036936576.1 mRNA upstream 65710 84048347 ~ 84084200 (-) False grsf1
TU1167230 other downstream 19569 83873900 ~ 83903039 (-) True ypel1
TU1167229 other downstream 22132 83873900 ~ 83900476 (-) False ypel1
TU1167110 other downstream 204000 83716077 ~ 83718608 (-) False G1025498
TU1167109 other downstream 204721 83715683 ~ 83717887 (-) False G1025498
TU1168443 other upstream 1204689 85187326 ~ 85197500 (-) False G1026586
TU1168973 other upstream 1630715 85613352 ~ 85614375 (-) True G1026978

Expression Profile