RNA id: XM_036936556.1


Basic Information

Item Value
RNA id XM_036936556.1
length 1729
RNA type mRNA
GC content 0.53
exon number 7
gene id LOC110535142
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 83922608 ~ 83982640 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCCATAGTGTCTCAGTGTAGCTAGCATACCGCAGTCAGCCTGTGTGTACAGCAGCGCAGGAAGACCACTTTATCATACGGAGGACTTCAGAAAGGCTCCCGGTAATAACGTTGTTACAGCGGTGACTTTTCCTTGTGGCCGTGAAGAACGTGTAAAAAGGCAGCCGGTTTTCACAATGGCGACAGCTGCGGTTTCTGCCAGTGGCCCCAACCCCGGAACCGGAGCTGAGTTGGTCCGAGGACAGGCCTTCGATGTCGGGCCCCGGTACCACAATCTGTCGTATATCGGTGAGGGCGCCTACGGAACGGTGTGctctgcGTATTGCCGTGACAACAAGGTCCGCGTGGCGATAAAGAAGATCAGTCCGTTTGAGCACCAGACATACTGCCAGAGGACTCTGAGAGAGATTAAGATCCTGCTGCGCTTCAAACATGAGAACATCATCAGCATCAACGACATCATCCTCACGCCCTCCATCGATCAGATGAAGGACGTCTACATAGTGCAGGACCTGATGGAGACAGACCTGTATAAGCTGCTGAAGACCCAGCGCCTGAGCAACGATCACATCTGTTACTTCCTGTACCAGATCCTGAGAGGCCTGAAGTACATCCATTCTGCCAACGTCCTGCACCGCGACCTCAAACCCTCCAACCTGCTGCTCAATACCACCTGTGATCTAAAGATCTGTGACTTCGGTCTGGCGCGTGTGGCTGACCCAGACCACGACCACACAGGCTTCCTGACAGAGTATGTAGCTACTCGCTGGTACCGGGCGCCTGAGATCATGCTCAACTCCAAGggttACACCAAGTCTATTGATATCTGGTCTGTGGGCTGCATCCTGGCTGAAATGCTCTCCAATAGACCCATCTTCCCCGGGAAGCACTACCTGGACcagctcaaccacatactgggTATCCTAGGGTCTCCTTCCCAGGAGGATCTGAACTGCATCATTAACATCAAGGCCAGGAACTACCTGCTGTCTCTCCCGCTGCGCTGCAAGGTCCCCTGGAACAGCCTCTTCCCCAAAGCCGACTCCAAAGCTCTGGACCTGCTGGATAAGATGTTGACCTTTAACCCCCACAAGAGGATCGAGGTGGAGGCGGCTCTGGCTCACCCTTACCTGGAGCAGTACTACGACCCTACAGATGAGCCTGTAACAGAGACTCCCTTCAAGTTTGCGATGGAGCTTGATGATCTCCCCAAAGAGACCCTGAAGGAGCTGATCTTTGAAGAGACGGCTcgcttcaacacagtctgcaggCCCTAACCCGTACACACAGGTACAGTCTGCAGGCCCTAACCCGTACACACAGGTACAAACAGCTTCAAACAGTCTGCAGgccctaacccatacacacaggtacaaacagcttcaacacagtctgcaggccctaacccatacacacaggtacagacagcttcaacacagtctgcaggccctaacccatacacacaggtacaaacagcttcaacacagtctgcaggCCCTAACCCATACAGACagcttcaacacagtctgcaggccctaacccatacacacaggtacagacagcttcaacacagtctgcaggccctaacccatacacacaggtacagacagcttcaacacagtctgcaggCCCTAACCCATACAGACagcttcaacacagtctgcaggCCCTAACCCATACAGACagcttcaacacagtctgcaggccctaacccatacacacaggtaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1167280 lncRNA downstream 5080 83919212 ~ 83921303 (-) True LOC110536511
TU1167282 lncRNA downstream 7701 83917409 ~ 83918682 (-) False LOC110536511
TU1167283 lncRNA downstream 7701 83917409 ~ 83918682 (-) False LOC110536511
TU1167275 lncRNA downstream 10180 83911274 ~ 83916203 (-) True G1025630
TU1167297 lncRNA downstream 16068 83909816 ~ 83910315 (-) True G1025645
TU1167358 lncRNA upstream 25254 84007892 ~ 84009482 (-) True G1025693
TU1167373 lncRNA upstream 37608 84020246 ~ 84024491 (-) True G1025701
TU1167349 lncRNA upstream 49134 84031772 ~ 84036310 (-) False G1025684
TU1167348 lncRNA upstream 49676 84032314 ~ 84035752 (-) True G1025684
TU1167350 lncRNA upstream 61136 84043774 ~ 84047257 (-) True G1025685
XR_005034772.1 mRNA downstream 6754 83916350 ~ 83919629 (-) False LOC110536511
XR_005034773.1 mRNA upstream 62874 84045512 ~ 84084200 (-) False grsf1
XR_005034774.1 mRNA upstream 62874 84045512 ~ 84084200 (-) False grsf1
XR_005034775.1 mRNA upstream 62874 84045512 ~ 84084200 (-) False grsf1
XR_005034776.1 mRNA upstream 62874 84045512 ~ 84084200 (-) False grsf1
XM_036936576.1 mRNA upstream 65709 84048347 ~ 84084200 (-) False grsf1
TU1167230 other downstream 23344 83873900 ~ 83903039 (-) True ypel1
TU1167229 other downstream 25907 83873900 ~ 83900476 (-) False ypel1
TU1167110 other downstream 207775 83716077 ~ 83718608 (-) False G1025498
TU1167109 other downstream 208496 83715683 ~ 83717887 (-) False G1025498
TU1168443 other upstream 1204688 85187326 ~ 85197500 (-) False G1026586
TU1168973 other upstream 1630714 85613352 ~ 85614375 (-) True G1026978

Expression Profile