RNA id: XR_005034778.1


Basic Information

Item Value
RNA id XR_005034778.1
length 4159
RNA type mRNA
GC content 0.55
exon number 29
gene id smarca2
representative False

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 84501885 ~ 84719806 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaaacagagagggagggaccgtACAGATAGCAGTCATATTTTAAagcagaaatatatatatatatatatatatattttagactgAATTCCGTTTAGTCTACCGTAAGtacagtcagtcagccagccagtagaTCAGTAGATGTCCACTCCTACGGAGCATGCGGGTGGTATGTCCCAGCCCCACCCGGGTCCCTCTCCGTGCCCAGGCCGGTCCCCAGGACCAGGCCCCTCCCCTAGCTCCGGACCCCCCAGCGGACCCCCCAGCCTACAGGGGCAGGGGGCTGGGGACTACCTTCAGGACACCATGCTCCCCATGCACCAGCCGATGGAGGGCGTTGATGAGAAGGGGATGGGAGATGAGACGAACTATGGCCAGATGAAGGGAGTTGGGATGAGGGCGCTACACAGCGGAATGGGCCCTTCACAGAGCCCTCTGGACCAGCACATCAACCAAGGCTACATGCCCCCACAACCCTCCCCCCTGGGTGTCCCAGAGCACGCTTCCAGCCCCCTATCCAGGGGCGGCCCTACGCCTCCCATGCCCCCTCAGATGTCCCCCGTCCCGTCGGGCTCCATGATACCCCAGATGGACCCCCAGTCAGCCATGGGTCCACAGGGGCCTCTTGGTCGTGGCTGCTCCTCCTTCAGCCCTGTCCAATTACAGCAACTCCGGGCCCAGATCCTGGCCTATAAGATTCTGGGGCGGGGCCAACCGCTTCCTGAAAACCTCCAGCTGGCGGTCCAGGGCAAGAGGAGTCTGCCCACCAtgcagcaacaacagcagcagcagccgaGCACTGGCAGCCCCTACAGCAGGCCTCCTGgtATGTCATCTATGTCTGGCCCTCAGTCAGGCCCTGGTCCCACCATCACTATGCCAGGACAAAATCAGACACACGGACCCAAACCCTGGCCTGAAGGCCAAGGTGGTGATACTCCCAGCAACCCCCAGAAGCTTCTAGCTCCGCCCCCCAGTGGTAGACCCTCACCTGCCCCACCCCAGGCCCCTCCTCCTGGACCCATGTCCGGCCCCTCTATTACCCATCAGCCCCAGGGACAGCAGCCGTCGCCCGTCATCACACTGCAACAGAAACAGAACCGCGTTACGCCCATCCAGAAACCACAGGGCCTGGACCCCACAGAGATACTGcaggagagagagtacagGCTGCAGGCTCGTATCGCTCACCGGATCCGGGAGCTGGAGAGTCTACCTGGAGCTCTGCCTCCGGACCTGAGGAGTAAAGCCACGGTGGAACTCAAGGCTTTGAGACTTCTCAACTTCCAACGACAGCTGCGTCAGGATGTGGTCCAGTGTATGCGTAGAGACACCACCCTGGAGACAGCCCTGAACTCCAAGGCTTACAAGAGGAGCAAGCGCCAGACGCTGAGGGAGGCTCGCATGACAGAGAAACTGGAGAAACAGCAGAAGATGGAACAGGAGAGGAAACGCAGACAGAAACACCAGGAGTATCTGAACAGCATCCTGCAGCATGCCAAGGACTTTAAGGACTACCACCGCTCTATCACTGCCAAGATGCAGAAGCAGAACAAGGCCATCACCACCTGgcacactaacacagagagagaacagaagaaagagacagagaggatcgagaaggagaggatgaggagactcATGGCGGAAGATGAGGAGGGCTACAGGAAGCTGATTGACCAGAAGAAGGACAAGCGTCTGGCGTATCTGCTGCAGCAGACTGACGAGTACGTAGCTAACCTCACTGACCTAGTCTACGAACACAAGGCTGCACAAGCAGCCaacatgaagaagaagaagaagaagcagaagaagaagAATATTGATGAGAGCGGGGAAGGGATGAGTGGCATCGGGCCTGACGGGGAGCCCATTGATGAGAGCAGTCAGATGAGTGAGCTGCCAGTCAAAGTGATccagacagaaacagggaaggttCTGCAGGGGCTCGACGCCCCCAAGTCCTCACAGTTGGAGGCCTGGCTAGAGATGAACCCTGGATATGAAGTTGCCCCAAGGTCAGACAGTGAGGAGAGCGGCTCAGAGTTTGAGGACGAGGATGAAGAGGAGGTCCCAGGAGTGTCCAGCCGGCCAGACTCTCAGTCTGAGGAGAAGAAGATCATCGATCCCAACAGTGACGAGTTCCCAGAGAAAGTAACCAAGCACATCATCGAGTCTGCAAAGCAGGATGTTGATGATGAGTACACGGTGCCAGAGACTGAACTGACCATCTTCCAGCAGTCCTACTACGGTGTGGCTCACGCCATCATTGAGAGGGTCGACAAACAGTCTTCGCTGCTCATCAACGGCATGCTCAAACACTACCAGGTGCAGGGTCTGGAGTGGATGGTGTCTCTGTACAACAATAATCTGAATGGTATCCTGGCTGATGAGATGGGGCTGGGCAAGACCATCCAGACCATCGCCCTCATTACATACCTCATGGAACACAAGAGACTCAACGGACCCTACCTCATCATCGTTCCACTATCgaCTCTGTCCAACTGGGTCTATGAGCTGGATAAATGGTCTCCGTCCGTTGTGAAGATTTCCTACAAGGGGACCCCTGCTATGAGACGAGGCCTGGTGGCTCAGCTCCGCAGCGGGAAGTTCAATGTCCTCCTCACCACCTACGAGTACATAATTAAGGACAAACAGATCCTGGCCAAGATCCGTTGGAAGTACATGATTGTAGATGAGGGTCACCGTATGAAGAACCACCATTGTAAGCTGACCCAGGTGTTGAATACCCATTACGTGGCCCCACGGCGCCTCCTCCTGACGGGCACGCCACTGCAGAACAAGCTCCCTGAGCTCTGGGCCCTGCTCAACTTCCTGCTGCCGACCATCTTCAAGTCCTGCAACACTTTCGAGCAGTGGTTCAATGCCCCCTTTGCCATGACCGGGGAGAGGGTGGACTTGAATGAGGAAGAGACAATCCTGATTATCCGCCGTCTCCACAAGGTGCTCCGCCCCTTCCTGCTCAGACGACTCAAGAAGGAGGTGGAGTCCCAGCTTCCAGAGAAGGTGGAGTATGTCATCAAGTGTGATATGTCGGCCATCCAGAGGGTTCTGTACCGTCACATGCAGGGCAGAGGAATCCTCCTCACCGATGGATCAGAGAAAGACAAGAAGGGTAAAGGAGGAGCGAAGACCCTGATGAACACCATCATGCAGCTGAAGAAGATCTGCAACCACCCCTACATGTTCCCACACATTGAGGAGTCCTTTGCTGAGCACTTAGGCTTCCCGAACGGCGTTATAAGCGGACACGAGCTGTACCGTGCATCAGGGAAGTTTGAGCTGCTGGACCGGATCCTTCCCAAGCTGCATGTCACCAACCACAGAGTTCTGCTGTTCTGTCAGATGACATCACTCATGACCATCATGGAGGACTACTTTGCTTACCGCAATTTCCTCTACTTGCGCCTCGACGGCACCACCAAGTCTGAGGACCGTGCGGCGCTGCTGAAGAAGTTCAATGAGAAAGGTTCCCAGTACTTTGTGTTCCTACTGAGCACCAGAGCCGGGGGACTGGGCCTCAACCTGCAGGCTGCGGACACTGTGGTCATCTTTGACTCTGACTGGAACcctcaccagGACCTCCAAGCCCAGGACAGGGCTCATCGTATTGGTCAGAAGAACGAGGTGCGTGTTCTGCGTCTGTGTACGGTCAACAGTGTGGAGGAGAAGATCCTAGCGGCTGCTAAGTACAAACTGAACGTGGACCAGAAGGTGATTCAAGCCGGGATGTTTGACCAGAAGTCCTCCAGCCACGAGAGGAGAGCCTTTTTACAGGCCATACTGGAAACAGAAGAGCAGAATGAGGTTGGTCACGGTGGCGTGGGAATAAAGATTAAATGCAGTTCCTTGCAGgaggaagagaaaagTCAGGTGGCTATGGAGGAAGACGAGGTGCCTGATGATGAGACTCTGAACCAGATGATCGCCCGTAATGAGGATGAGTTTGAGCTGTTCATGGTGTGAAGCACATTACATTAACAGTAGCCTTTGGTATGGTGCTTTCGAGACATTAATATGAGTTTGAATACTGACACAATAAGATCACTATAGCGTaaaggttaggattaaggtaaaggttagggaaagggtaaaggttaaggaaagggtaaaggttaggattaaggtaaaggttaggga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1167960 lncRNA downstream 37299 84537245 ~ 84540416 (-) False G1026169
TU1167959 lncRNA downstream 37299 84538050 ~ 84540416 (-) True G1026169
TU1167957 lncRNA downstream 38062 84536272 ~ 84539653 (-) True G1026167
TU1167955 lncRNA downstream 43581 84524395 ~ 84534134 (-) True G1026165
TU1167953 lncRNA downstream 56938 84517077 ~ 84520777 (-) False G1026164
TU1168035 lncRNA upstream 22265 84742071 ~ 84742354 (-) True G1026230
TU1168036 lncRNA upstream 23395 84743201 ~ 84743401 (-) True G1026231
TU1168037 lncRNA upstream 38096 84757902 ~ 84758137 (-) True G1026232
TU1168039 lncRNA upstream 40996 84760802 ~ 84767945 (-) True G1026234
TU1168049 lncRNA upstream 56210 84776016 ~ 84776444 (-) True G1026241
XM_036936580.1 mRNA downstream 151563 84235293 ~ 84426152 (-) False adamts3
XM_036936581.1 mRNA downstream 151563 84235293 ~ 84426152 (-) False adamts3
XM_036936583.1 mRNA downstream 151563 84235293 ~ 84426152 (-) True adamts3
XM_036936582.1 mRNA downstream 196821 84235293 ~ 84380894 (-) False adamts3
XM_036936578.1 mRNA downstream 493515 84048347 ~ 84084200 (-) True grsf1
XM_021601135.2 mRNA upstream 241485 84961291 ~ 84965767 (-) True dmrt2a
XM_036936595.1 mRNA upstream 326308 85046114 ~ 85122372 (-) True LOC118937429
XM_036936601.1 mRNA upstream 519803 85239609 ~ 85345671 (-) False kank1a
XM_036936602.1 mRNA upstream 519803 85239609 ~ 85391931 (-) False kank1a
XM_036936599.1 mRNA upstream 519803 85239609 ~ 85391997 (-) False kank1a
TU1167230 other downstream 674676 83873900 ~ 83903039 (-) True ypel1
TU1167229 other downstream 677239 83873900 ~ 83900476 (-) False ypel1
TU1167110 other downstream 859107 83716077 ~ 83718608 (-) False G1025498
TU1167109 other downstream 859828 83715683 ~ 83717887 (-) False G1025498
TU1168443 other upstream 467520 85187326 ~ 85197500 (-) False G1026586
TU1168973 other upstream 893546 85613352 ~ 85614375 (-) True G1026978

Expression Profile