RNA id: TU1063814


Basic Information

Item Value
RNA id TU1063814
length 223
lncRNA type intronic
GC content 0.45
exon number 2
gene id G933117
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 141341 ~ 141755 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggaagataatcaaggaggtgatggagtccaggtgagtgacagatatagggaagataatcaagggggtgatggagtccaggtgagtgacagataaagagaagataatcaaggaggtgatggagtccaggtgagtgacagatatagagaagataatcaaggaggtgatggagtccaggtgagtgacagatatagagaagataatcaaggaggtgatggagtccag

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1063807 lncRNA upstream 11539 129199 ~ 129802 (+) True G933110
TU1063796 lncRNA upstream 31158 108856 ~ 110183 (+) True G933100
TU1063760 lncRNA upstream 103403 36185 ~ 37938 (+) True G933073
TU1063762 lncRNA upstream 110311 29993 ~ 31030 (+) True G933075
TU1063842 lncRNA downstream 38372 180127 ~ 181004 (+) True G933145
TU1063870 lncRNA downstream 66365 208120 ~ 213206 (+) True G933162
TU1063882 lncRNA downstream 99370 241125 ~ 241638 (+) True G933174
TU1063894 lncRNA downstream 131119 272874 ~ 273180 (+) True G933185
TU1063915 lncRNA downstream 169143 310898 ~ 311202 (+) False G933202
XM_036934636.1 mRNA upstream 52990 63442 ~ 88351 (+) True gars1
XM_036934638.1 mRNA downstream 51597 193352 ~ 307839 (+) False dlec1
XM_036934639.1 mRNA downstream 51676 193431 ~ 307840 (+) True dlec1
XM_036934640.1 mRNA downstream 198886 340641 ~ 378363 (+) True cry-dash
XM_036934643.1 mRNA downstream 250357 392112 ~ 435459 (+) False slc22a13b
XM_036934642.1 mRNA downstream 250375 392130 ~ 438530 (+) False slc22a13b
TU1064305 other downstream 344075 485830 ~ 539412 (+) True LOC110535152
TU1064302 other downstream 419898 561653 ~ 562659 (+) False G933532
TU1064300 other downstream 420259 562014 ~ 562659 (+) True G933532
TU1064355 other downstream 454568 596323 ~ 604169 (+) True LOC110536523
TU1064476 other downstream 583432 725187 ~ 728205 (+) True G933679

Expression Profile