RNA id: TU1063917


Basic Information

Item Value
RNA id TU1063917
length 985
lncRNA type antisense_over
GC content 0.44
exon number 2
gene id G933202
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 310898 ~ 311957 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCAATTTGGAAAAATGAATCCCATCCCAGTCATCCTCTGGGATAACAGACATTCTAGAGTAATAATTACATAACCAACGTTCTCTAGTAATACAGGACCCGTGCAAATAGTGCTTAACTAATCTaccccatgttattccatatcaccatctaactaatctaccccatgttattccatatcaccatCTAACTAATCTaccccatgttattccatatcactcTTTCAGCCCCTAACATTGAACATTTCAAACAAAATCACATATTTACAGATTGATTTGTACAGCGCTATATCAAAGCACAATGATGCATTGCTTTCCTGAAATGCAAGGCACTTAAAGATTTATCAGACTTTGGCAAGGCATTAACATACAGTAATCTACGGAATGATTAACCAGTCAGTTCTCGTGCCGTCATTTATATGGAATCCAAAAACATGCACTCTCTGATGAATCACACAACTGACAAACTGTTAGTACTCAATAGTCAGGGCAGGAACACCTCAACGGTTAATCATCGGCTGATTCTGTCAAAGGTGTAAGAAGCATCACAGTGTAAACCCTTCATCAATATTATTATTGATCAGCTCCCTCTAAGGTCCAGGGTACTCAAACACTGCTGCAGCTCCCATCCCTGTTCCGATACACATGGACACCACGCCATAGGCCCTGGGGAACAGAACATGGGTTATTGTGAGCAAGGCTAGGGGGTGGCGATGAGACTACTTTCTAGACTATTTAGTAGATATAGCACAAGAGGTCATACGATTGAGGATTCGATGGGACTAGACATATCCTTACCTCCTGCCCCGGCGTTTGAGTTCGTTGAGCAGGGTGACAACCTGGCGGGCCCCGGTGCAGCCCAGAGGGTGACCCAGGGCGATGGCTCCTCCGTTAGGGTTCACCTTCTCCAGGGGGATCCCCAGCTTCTCCACGCAATACACAGCCTGGGACACACATAGTCaaaacagtcaaaagtttggacagac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1063894 lncRNA upstream 37718 272874 ~ 273180 (+) True G933185
TU1063882 lncRNA upstream 69260 241125 ~ 241638 (+) True G933174
TU1063870 lncRNA upstream 97692 208120 ~ 213206 (+) True G933162
TU1063842 lncRNA upstream 129894 180127 ~ 181004 (+) True G933145
TU1063814 lncRNA upstream 169143 141341 ~ 141755 (+) True G933117
TU1063942 lncRNA downstream 26341 338298 ~ 338586 (+) True G933222
TU1063946 lncRNA downstream 32671 344628 ~ 344912 (+) True G933225
TU1063962 lncRNA downstream 69189 381146 ~ 381378 (+) True G933240
TU1063967 lncRNA downstream 77515 389472 ~ 389684 (+) True G933245
TU1063968 lncRNA downstream 78814 390771 ~ 391077 (+) True G933246
XM_036934639.1 mRNA upstream 3058 193431 ~ 307840 (+) True dlec1
XM_036934638.1 mRNA upstream 3059 193352 ~ 307839 (+) False dlec1
XM_036934636.1 mRNA upstream 222547 63442 ~ 88351 (+) True gars1
XM_036934640.1 mRNA downstream 28684 340641 ~ 378363 (+) True cry-dash
XM_036934643.1 mRNA downstream 80155 392112 ~ 435459 (+) False slc22a13b
XM_036934642.1 mRNA downstream 80173 392130 ~ 438530 (+) False slc22a13b
XM_021620013.2 mRNA downstream 173735 485692 ~ 542353 (+) False LOC110535152
XM_036936628.1 mRNA downstream 249477 561434 ~ 564576 (+) True LOC118937458
TU1064305 other downstream 173873 485830 ~ 539412 (+) True LOC110535152
TU1064302 other downstream 249696 561653 ~ 562659 (+) False G933532
TU1064300 other downstream 250057 562014 ~ 562659 (+) True G933532
TU1064355 other downstream 284366 596323 ~ 604169 (+) True LOC110536523
TU1064476 other downstream 413230 725187 ~ 728205 (+) True G933679

Expression Profile