RNA id: TU1168294


Basic Information

Item Value
RNA id TU1168294
length 304
lncRNA type intronic
GC content 0.45
exon number 1
gene id G1026472
representative True

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 85072761 ~ 85073064 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agtcctgactgaggatgtgtttttgtgttctctgtagtcctgactgaggatgtgtttctgtctctgtagtcctgactgaggatgtgtttctgtgttctctgtagtcctgactgaggatgtgtttctgtctctgtagtcctgactgaggatgtgtttctgtgttctctgtagtcctgaataGGATgtctttctgtgttctctgtagtcctgactgaggatgtgtttctgtgttctctgtaatcctgactgaggatgtgtttctgtctctgtagtcctgactgaggatgtctttctgtgtctgtag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1168288 lncRNA downstream 12192 85059984 ~ 85060569 (-) True G1026466
TU1168282 lncRNA downstream 16248 85050354 ~ 85056513 (-) True G1026460
TU1168268 lncRNA downstream 32658 85039863 ~ 85040103 (-) True G1026447
TU1168256 lncRNA downstream 43534 85028843 ~ 85029227 (-) True G1026435
TU1168255 lncRNA downstream 44552 85027857 ~ 85028209 (-) True G1026434
TU1168382 lncRNA upstream 68726 85141790 ~ 85141989 (-) True G1026534
TU1168390 lncRNA upstream 79315 85152379 ~ 85153018 (-) True G1026542
TU1168400 lncRNA upstream 86567 85159631 ~ 85159839 (-) True G1026552
TU1168406 lncRNA upstream 88628 85161692 ~ 85161893 (-) True G1026558
TU1168410 lncRNA upstream 90505 85163569 ~ 85163777 (-) True G1026562
XM_021601135.2 mRNA downstream 106994 84961291 ~ 84965767 (-) True dmrt2a
XM_036936592.1 mRNA downstream 352955 84504112 ~ 84719806 (-) False smarca2
XM_036936601.1 mRNA upstream 166545 85239609 ~ 85345671 (-) False kank1a
XM_036936602.1 mRNA upstream 166545 85239609 ~ 85391931 (-) False kank1a
XM_036936599.1 mRNA upstream 166545 85239609 ~ 85391997 (-) False kank1a
XM_036936603.1 mRNA upstream 175345 85248409 ~ 85392002 (-) False kank1a
XM_036936597.1 mRNA upstream 379121 85452185 ~ 85658734 (-) False dapk1
TU1167230 other downstream 1169722 83873900 ~ 83903039 (-) True ypel1
TU1167229 other downstream 1172285 83873900 ~ 83900476 (-) False ypel1
TU1167110 other downstream 1354153 83716077 ~ 83718608 (-) False G1025498
TU1167109 other downstream 1354874 83715683 ~ 83717887 (-) False G1025498
TU1168443 other upstream 114262 85187326 ~ 85197500 (-) False G1026586
TU1168973 other upstream 540288 85613352 ~ 85614375 (-) True G1026978

Expression Profile