RNA id: TU1251949


Basic Information

Item Value
RNA id TU1251949
length 270
lncRNA type sense_over
GC content 0.41
exon number 2
gene id LOC110538052
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 65802490 ~ 65807617 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCGACATGTATCACCTGCCATGAAACCTGAGAGGAGACTGAAACGGTACTTCAAGAAGTTGAATAGGAAGGTTCTGAGAAAAATGAACTACAGTGCACAGGCGTGGGAGCTCATCAGGAAAGAGATGAAACGTCATCTGCAAATATTGGATATCCTTGTGGCACAATTGTACTGATCATCCAGACACATTTCAGAAGCTACGCCCTTACCAGTTTATAAAGCATGAATACAATCATGTGGGACCCTGTCAGTCTATTTAttatatttaa

Function

GO:

id name namespace
GO:0051607 defense response to virus biological_process
GO:0005615 extracellular space cellular_component
GO:0005125 cytokine activity molecular_function
GO:0005126 cytokine receptor binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1251823 lncRNA upstream 189514 65609578 ~ 65617409 (+) True G1100821
TU1251800 lncRNA upstream 209255 65575619 ~ 65597668 (+) True G1100800
TU1251441 lncRNA upstream 274052 65524903 ~ 65532871 (+) True G1100472
TU1251411 lncRNA upstream 356354 65450229 ~ 65450569 (+) True G1100443
TU1251409 lncRNA upstream 363783 65442899 ~ 65443140 (+) True G1100441
TU1252034 lncRNA downstream 52300 65859820 ~ 65971064 (+) False G1101009
TU1252040 lncRNA downstream 58012 65865532 ~ 65893566 (+) True G1101013
TU1252043 lncRNA downstream 66851 65874371 ~ 65928968 (+) True G1101016
TU1252035 lncRNA downstream 134693 65942213 ~ 65971064 (+) True G1101009
TU1252372 lncRNA downstream 371410 66178930 ~ 66179473 (+) True G1101312
XM_021624611.2 mRNA upstream 13674 65791278 ~ 65793249 (+) True LOC110538049
XM_021624602.2 mRNA upstream 46863 65755903 ~ 65760060 (+) False LOC110538043
XM_021624600.2 mRNA upstream 46863 65756467 ~ 65760060 (+) True LOC110538043
XM_036938096.1 mRNA upstream 61366 65741411 ~ 65745557 (+) False LOC110511235
XM_036938095.1 mRNA upstream 61366 65741974 ~ 65745557 (+) True LOC110511235
XM_021626117.2 mRNA downstream 11450 65818970 ~ 65820338 (+) True LOC110539157
XM_021626118.2 mRNA downstream 26103 65833623 ~ 65835321 (+) True LOC110539158
XM_021625910.2 mRNA downstream 203687 66011207 ~ 66012308 (+) True LOC110538942
XM_021624623.2 mRNA downstream 297823 66105343 ~ 66142689 (+) False LOC110538062
XM_021624624.2 mRNA downstream 297823 66105343 ~ 66142689 (+) False LOC110538062
TU1251400 other upstream 373466 65433140 ~ 65433457 (+) True G1100432
TU1250127 other upstream 1430709 64370155 ~ 64376214 (+) False si:dkey-110g7.8
TU1250128 other upstream 1430709 64370155 ~ 64376214 (+) True si:dkey-110g7.8
TU1247749 other upstream 1551859 64254612 ~ 64255064 (+) True G1097122
TU1247743 other upstream 1578239 64228001 ~ 64228684 (+) True G1097116
TU1252351 other downstream 341689 66149209 ~ 66162833 (+) False LOC110538063
TU1252355 other downstream 358911 66166431 ~ 66168197 (+) True LOC110538063
TU1252863 other downstream 854444 66661964 ~ 66663457 (+) True LOC110538072
TU1252914 other downstream 917141 66724661 ~ 66771391 (+) False G1101805
TU1253139 other downstream 1251215 67058735 ~ 67059407 (+) False G1102021

Expression Profile