RNA id: TU1247743



Basic Information


Item Value
RNA id TU1247743
length 684
RNA type TUCP
GC content 0.50
exon number 1
gene id G1097116
representative True

Chromosome Information


Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 64228001 ~ 64228684 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


cttccgtcccgtccttggacactgtgctatctaacctccaaacgagcttcaatgccatacagcactccttccgtggcctccaactgctcttaaacgctagtaaaaccaaatgcatgcttttcaaccgttcgctgcctgcacccgcacgcctgaccagcatcaccaccctggatggttccgaccttgaatatgtggacatctataagtacctaggtgtctggctagactctaaactctccttccagacccatatcaaacatctccaatcgaaaatcaaatcaagagtcggctttctattccgcaacaaagcctccttcactcacgctgccaaacttaccctagtaaaactgactatcctaccgatcctcgacttcggtgatgtcatctacaaaattgcttccaacactctactcagcaaacttgatgcagtttatcacagtgccatccgttttgtcactaaagcaccttataccacccaccactgcgacttgtatgctctagtcggctggccctcgctacatattcgtcgccagacccactggctccaggtcatctacaagtccatgctaggtaaagctccgccttatctcagttcactggttacgatggcaacacccatccgtagcacgcgctccagcaggtgtatctcactgatcatccctaaagccaacacctcatttggcc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1247742 lncRNA upstream 814 64226987 ~ 64227187 (+) True G1097115
TU1247740 lncRNA upstream 4031 64223679 ~ 64223970 (+) True G1097113
TU1247738 lncRNA upstream 7361 64220250 ~ 64220640 (+) True G1097111
TU1247674 lncRNA upstream 58355 64166275 ~ 64169646 (+) True G1097047
TU1247697 lncRNA upstream 76962 64150455 ~ 64151039 (+) True G1097070
TU1247744 lncRNA downstream 86 64228770 ~ 64229243 (+) True G1097117
TU1247682 lncRNA downstream 14527 64243211 ~ 64243564 (+) True G1097055
TU1247679 lncRNA downstream 15860 64244544 ~ 64245781 (+) True G1097052
TU1247748 lncRNA downstream 24513 64253197 ~ 64253474 (+) True G1097121
TU1247753 lncRNA downstream 35808 64264492 ~ 64264703 (+) True G1097126
XM_036938074.1 mRNA upstream 55823 64142856 ~ 64172178 (+) True baiap2l2a
XM_021624529.2 mRNA upstream 65049 64142856 ~ 64162952 (+) False baiap2l2a
XM_021624530.2 mRNA upstream 65659 64142855 ~ 64162342 (+) False baiap2l2a
XM_021624531.2 mRNA upstream 65659 64142855 ~ 64162342 (+) False baiap2l2a
XM_021624532.2 mRNA upstream 65659 64142855 ~ 64162342 (+) False baiap2l2a
XM_021624535.2 mRNA downstream 3455 64232139 ~ 64242953 (+) True LOC110538012
XM_021624541.2 mRNA downstream 141274 64369958 ~ 64376356 (+) False si:dkey-110g7.8
XM_021624548.2 mRNA downstream 178689 64407373 ~ 64416073 (+) True LOC110538020
XM_021624555.2 mRNA downstream 201821 64430505 ~ 64438581 (+) True LOC110538022
XM_021624557.2 mRNA downstream 215076 64443760 ~ 64445157 (+) True LOC110538024
TU1247690 other upstream 91297 64136358 ~ 64136704 (+) True G1097063
TU1247501 other upstream 337444 63888096 ~ 63890557 (+) False LOC110538933
TU1247110 other upstream 893307 63302491 ~ 63334694 (+) True LOC100305204
TU1246640 other upstream 1780527 62446504 ~ 62447474 (+) True LOC118937701
TU1245937 other upstream 2875656 61037739 ~ 61352345 (+) True G1095540
TU1247749 other downstream 25928 64254612 ~ 64255064 (+) True G1097122
TU1250127 other downstream 141471 64370155 ~ 64376214 (+) False si:dkey-110g7.8
TU1250128 other downstream 141471 64370155 ~ 64376214 (+) True si:dkey-110g7.8
TU1251400 other downstream 1204456 65433140 ~ 65433457 (+) True G1100432
TU1252351 other downstream 1920525 66149209 ~ 66162833 (+) False LOC110538063

Expression Profile