RNA id: XM_036940256.1


Basic Information

Item Value
RNA id XM_036940256.1
length 4410
RNA type mRNA
GC content 0.51
exon number 7
gene id LOC110485521
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 12871885 ~ 12878585 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGACTGATAGAGGTGAGGAGGGTTACACAGGAGAGACAAGCCGGTTCAGAGCGACTGGGTTCATccgagagaaggaaggagaagacACACAGGGATACAGACAGAAAACCCAGCGACCCGTTCCAACAAACTCCTACCTGGctatGACTGACGTCCTCCCCGACAGCCATGCCAGAACTCCAGAGCCAGAGCTCCGCCTGGTCCTCCTAGGGACCATCGGCTGTGGCAAGACCCTGTCAGGAGACACCCTCCTGGGCCAGTCCTCCTCCggctctccttcctcctctggtTCTTCGCCCAGGCTTTGCCAGCTGAGGCCTGGGGCCTCCGAGGGCCGGAGGTTGACTGTGGTGGAGGCCCCTCGCTGGTACTGGAGCGGGGGCCACATGGAGGCTGGggtgaggaaggagacagagagggcacTTGAGCTGGCTGCCCCGGGGCCACACGCCTTCCTGCTGCTGGTTCCTGTCGGCCAGTTCACCGAGGTGGAGCACAGAGTGCCCGCTGAGCTGGAGGAGGTGTTTGGGGAGGGGGTGTTGAAACACACCCTGGTACTGTTCACCTGTGGAGACTACCTGATGGGCCAGGGGGCGGGACAGTACCTGgagggagaggaccctgggctcagggAGGTGATTGACAGGTGTGGGGGCCAATACCACGTCCTCAACAACCGCCGACCGCAGGACAGGGAGCAGGTCAGGGAGCTGCTGGAGAAGGTGGAGAACATGGTACAAAAGAACAGAGGATGCTACATACGACAAAACACCctgcagagagagatggaagaacaagcgagggggagagagagggaactgaaGGAGAAGGTGGAAGAacaagcgagggagagagagagggaactgaaGAGGTACAAagtgaaggaggagaaagagactgtGCTGGAATCTAGACATgtcacaaacacagagacacccaGATATTGTGGAAGCCGGAAAAGAGAGGTTACACCTAACTCTGctatagagaggagaagagaggaagagagggaagagatcaagagaggggaagagagtgaggaGATGGAAAACTGGAAGGAAGAGATGGagaagataaagaaagagagggatgagataatgaagagcaggaaagagaaggaagagatggagagaaaaatagaggaagagtgggagaagagaagaaaatatgagatggagaagagaagggggagagagagggaactgaaAGAGAAGGTGGAAGAacaagcgagggagagagagagggaactgaaGGAGAAGGTGGAAGAacaagcgagggagagagagagggaaatgaagGAGAAGGTGGAAGAacaagcgagggggagagagagggaactgaaGGAGAAGGTGGAAGAacaagcgagggggagagagagggaactgaaGGAGAAGGTGGAAGAacaagcgagggagagagagagggaaatgaagGAGAAGGTGGAAGAacaagcgagggggagagagagggaactgaaGGAGAAGGTGGAAGAacaagcgagggggagagagagggaactgaaGGAGAAGGTGGAAGAacaagcgagggggagagagagggaactgaaGGAGAAGGTGGAAGAacaagcgagggggagagagagggaactgaaGGAGAAGGTGGAAGAacaagcgagggggagagagagggaactgaaGGAGAAGGTGGAAGAacaagcgagggggagagagagggaactggaaTCTAGACACGTCACCAACACAGAGACACGCAGATATTGGGGAAACAGGAAAAGAGAGGTTACACCTAACTCTGctatagagaggagaagagaggaagagagggaagagatcaagaggagaagggaagagatggagaggaaaagagaagaagagattgagaggagaagaagggaagATATGGAAGAGAAAGTGACTGTGAAACCCTTGGTTAACTGTCTTCAATCAACACCAACACAACAGCAGCAGCCAAAAAAGCCCCAGAATGGTGGTCCAGCACTGTTCACAAGGATCCCTAGTTTCCATCTGACTGAAGAGGGCGCTATACTCTCACAGCTGTCCGAACTCGAAGCAAAACCAGCCCAGAAAGTTGTTAATACCTTCTGCCACAGAATCAACAGCATTGGAGAGAAGacaaccacctcctcctcctcctacacctcctcctcctcctcccagtcaGAGTTGCGTGTGGTTCTGCTGGGTAGGTCAGGGTCAGGGAAGAGTGCAGCAGGTAATATCATACTGGGGCGGGAGGAGTTTGTGTCTCGACCAGACATTACCACAGCCGTCACTCAGGACTGTCAGAAGAGCAGGGCCCTCGTTGCCGGGAGACGGgtgGCAGTGGTGGACACTCCAGACTGGTTCCGCTCCGAGCACCCTCCCAATGTGGTCCGTTCCCAGCTGTCGTCCTGTGTGGCCCTCTCGGCCCCTGGCCCCCACGCCTTCATCCTCTGTGTCCCCGTGGACCAACCAGCCCAGGCAGAGCTACAGGCTCTAGGGGCCCTAGAGAAAGTCTTTGGTCCTGGGGCGGTCCGGACCCACACCCTGGTCCTCTTCACTCACTCCGATCGGTTGAAGGAGAGCGGGAAAGTGGGAGTGGAAGGAGTGGAGAAGTATATCTCCAGCCAGAGGAGAGATTTGTTGGAGTTGGTTAAACGATGTGGGGATCGGTATcatgtgatggagagagggagcggaggaaaagaggaggaggagaggaagaggaggagtgtgggGGAGTTATTGGAGAAGGTGGagcagacagtgagagagggaggaggagagtgttTCTCCTGTCCGCTCTTCCAGGAGGCGGAGGATagggtgagacagagacaggaagagatagtgagggagaggaggggaagaggagaggaggtgaagagacACGCGCTTCATTCCTACTCCATGCAGCccttgagagagacagaggaagatgtggatgaggaggagaacgagagaacgagagaggaggcGGAGAAGAGTGTGAGCGCCCTGGAATTGGAAAATCTTCCCTCGCTCTCGTCCTCTTCTGCATGGTATTCGTCGCTCCTTCGCTCGGTGTGGGAGAAGGTGGGGGCGGGAGCGAGTAAGGTCCCCAAGCTGACGGCTGGAGGTGCGCTGCTGGGTGGGGTGGTGGGCGTGTTCTTTGGAGGGCCCATAGGGGGAGCTATAGGGGCCACTGCTGGATCTGTGGCCACTGAGGTGGGGAGAAGGAGGTTTAGCCAGACAAAGAACTCAGCAGAAGAGACAGATGCCACAGGGAGAATAGAAGGAGAAATCTTGGACAAGGTGTTGAAAACCGAGTGAGAGAGTCAGATCCACACACGTTGATATGGATGTACAGTACAGCATTTTATGAGAGATTAGAGGTTTCTACCTATGATATATATCCACAGGTGATTGCCTGTGACCGTGCAGACGTTGTACATATCTGTGATTATAAACTGGGTTGGTCGAGCCCTGAATGATGATTggttgacagccgtggtatatcagacagtataccacgggtatgacaaacatttctttttactgctctaattatgttggtaaccagttgatAATAGcgataaggcacctcgggggtttgtgatatatggccaatataccatggctatatactaCGTTgcatcgtgcctaagaacagcccttagccgtggtatattttccatataccacaccccctcgggccttattgcttaaaaatAATGCTGGTAATATTGTATATCTGTGAACATAATGTTGGTAACATTGTACAACATATACTGATGTGTAAGTTGTTTTGCGGCAAATACCGGTTCTCATTGACTGCTTCAATGTTTTGTTGTATTTCTTTTCCAGCTATTACAATTATGACTTGTTAAATAACTCACATGTGCTACATCATTATTATTCAAATTACATTCAACATGGTTTCTTTAAATGTTAAACTACTATTGTGCATATAGTTAATCCGTTTCTTAATGCTAATAAAACACATTGCATGATAATATCATTCAGTTGGGTTTGAAGGCCTACAATATGTAAAGTTGGTCCTGCAAATATGTAATAAAACccagaggggaggcagaggcaaGGGGGTATTATCTCCATGTCCCAGACTGCTTTGCCTCACCCTCCAGGCCTCTTGTATCAGTAGGACTGGATAGAGCAGGTCTAGGACACCAGCCCCTACCTCACCAACCACCTCTCCTCTGTGTGATCTGATCCTCAGGGGCATCCGTAGTTCACcctacaagctctcacagtctcacgtcagaattagacgttcatccatgtttctcaaacgtcaaatttcaaagtgtttgagGTTGAGTTTAGGCGTTAACTCCAAATTCTTATGGTTAGGCATTCATCCTGAATGGTTCATGCAACGATTAAGGTTTGGCATAGGATTAAAAcaaaatatcaaaaacaacttta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1305957 lncRNA downstream 1760 12869193 ~ 12870125 (-) True G1144975
TU1305912 lncRNA downstream 44064 12827255 ~ 12827821 (-) False G1144939
TU1305913 lncRNA downstream 44241 12827255 ~ 12827644 (-) True G1144939
TU1305908 lncRNA downstream 49460 12821663 ~ 12822425 (-) True G1144936
TU1305276 lncRNA downstream 79687 12791935 ~ 12792198 (-) True G1144438
TU1305960 lncRNA upstream 12691 12891276 ~ 12891608 (-) True G1144978
TU1305965 lncRNA upstream 22047 12900632 ~ 12901105 (-) False LOC110485643
TU1305966 lncRNA upstream 22047 12900632 ~ 12902863 (-) False LOC110485643
TU1305968 lncRNA upstream 22047 12900632 ~ 12902083 (-) True LOC110485643
TU1305930 lncRNA upstream 30174 12908759 ~ 12909558 (-) False LOC110485647
XM_021567705.2 mRNA downstream 112158 12754186 ~ 12759727 (-) True LOC110493438
XM_036940242.1 mRNA downstream 127667 12722542 ~ 12744218 (-) False LOC118938209
XM_036940240.1 mRNA downstream 128310 12722542 ~ 12743575 (-) False LOC118938209
XM_036940244.1 mRNA downstream 128482 12722542 ~ 12743403 (-) False LOC118938209
XM_036940241.1 mRNA downstream 136597 12722542 ~ 12735288 (-) False LOC118938209
XM_036940259.1 mRNA upstream 2363 12880948 ~ 12883297 (-) False LOC110485520
XM_036940257.1 mRNA upstream 2363 12880948 ~ 12883302 (-) False LOC110485520
XM_036940261.1 mRNA upstream 2363 12880948 ~ 12883302 (-) False LOC110485520
XM_036940258.1 mRNA upstream 2363 12880948 ~ 12883303 (-) False LOC110485520
XM_036940260.1 mRNA upstream 2363 12880948 ~ 12883307 (-) True LOC110485520
TU1305149 other downstream 253727 12617959 ~ 12618158 (-) True G1144338
TU1305145 other downstream 256326 12615119 ~ 12615559 (-) True G1144335
TU1305143 other downstream 256390 12614976 ~ 12615495 (-) False G1144335
TU1304992 other downstream 505600 12359015 ~ 12366285 (-) False LOC110485629
TU1306029 other upstream 246285 13124870 ~ 13126598 (-) True G1145035
TU1306063 other upstream 286929 13165514 ~ 13171157 (-) False LOC110485655
TU1306064 other upstream 287327 13165912 ~ 13171157 (-) False LOC110485655
TU1306052 other upstream 414350 13292935 ~ 13294143 (-) True G1145046
TU1306128 other upstream 478489 13357074 ~ 13360808 (-) True G1145110

Expression Profile