RNA id: TU1305966


Basic Information

Item Value
RNA id TU1305966
length 2232
lncRNA type sense_over
GC content 0.41
exon number 1
gene id LOC110485643
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 12900622 ~ 12904681 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tattttttaaatgtaacctttatttaactagtgaagtcggttaagaacaaattcttatttacaatgacggcctacaccggccaaactcggacggcgctgggccaattgtgtgccgccctatggggacagccaattgtgatacagtctggatttgaaccaggtggtctgtagtgacgcctctagcactgagatgcagtgtcttagaccactgcgccacttggaagCTCCATATGTAGGGCGTACCACACTGAGTGTGTTGAAAGTGGGGTGTTCTACTCTGTATTGGGGCTTTTGGAATTAGGAACGTCTGTCTTTCGCCTTTTCAGACTTGTTTTCAAATACATGTGAAGTGAAGGATATAGATGGAGATCTTTAGAAGTCATGATGAGCGATATTATTGACAACTGATTTCACCTTTGGATGATCTGAGGGTGGTAGACTAGAGATTGGCCCATTAGTTTAGTTTATGTAGGCTGGTCTTGGATCTGTTAGTGCAActgatggcacaaacagatctaTATCTTTGTTTATGTGGTTGGTTTATTTTAATTCCCTTTTCAATCATCCCCCTCCAGACTAAAATGTGCAATATGATGTGAGGAAGTGCTAGAATTGCACcgttctgattggtcaaaagaaggTGACCCCCGACCTTAACACTGCTGTCTCGGCCAATTAGCTTTAAGACGGGTATGGCCTTGAATGTCTCTCAAAAAAGCACAGGGCTCTTGACTAGAATGCAAACATTTTTCTCATTAAATGGcaatcatagagagagagaaaagttcaCAAAGTAATGAGATATGAGAATAAGCTATGAGGTCTCCATCCCATGCCGGTCTAGTAGGTTACCTCATGACTTACTACTGGCCTCATACCTTTATTGGAGATGTTGGATTTGTATgtatgttgttttacagggtggGTTGTTGTAGCTGTTAGTCCAGATctatttgtgctgtcttgccaaggTGGCCAGCCTTACTGGGCTAGCTCTTAGTACCTTAAACTGCATTTTCACCTTGGATCTTTTTCCTTACAAAGCTTTGCCTTGACTGTGTGCTGTCTTACTCTTATGAGATCatggcttgttgttgttgttcattcTTATGTTTACTGTTAGTGAGTGACTTTTGCGTCCAAAATGGCAAACtaatccctatataatgcactacttttgagcaaaGCACGATGCAGGAACTGGTCAagagcagtgcactatgtagggattagggtgccattttggacgtggCCCAAAATGCTGTGCCATTATCTATCCCCGAATTCTATGCACCTTGGGATCTCCTCTGGTACCGTGTAGGTCTGGGACTGTATTCACAAAGAGTCTTAGAGTAGGAGACCGTTTTGCCTTTTGGATCAGTTATATGGACTCCTAGTCTTTGTGACGACAGGCCTTGAATCAGGACAGAGGAAACATCTTTTGTTCTCCTTTTCCCTCTTCCTTCTTCTATTTCTCCTACTACTCACTCTATTGTCTCTTTGAATAACTTTATTGTAGAAGTGTTtgacaagagagaaagagaatgaataCGTGTCAAAATATAATTTACACTGTTTTGGATACTTTGTGTAAAGGTTGTATCTAGAGTGTTTTTTCCAATGTTGTCAGAAAATGTGTTTGTGAATATAgatctgttttttttgtattgtaGTGAGGATCTATTCTACATGATTGAATTCCAGAGGCTTTTTAAACTGTTTTGTTGATTGATTATTGGACTAAAATGAATAGGAAACTCTTATTGATTGACTGTGGTTTGATACTAACAAAGTAAGGACAAGTGAGAGAGGGTACAGACTCAAACTGAGGAGAATATAATGGATTGTGAGTTGAACCCATTCTGAATGTAACTATCTGATCGTGGACATTACTGTGATGAAGTCAAAACCAGGAGCGTATTTGAAATGTACCCTCATCACCAACTCTCTTCAGGTGAAAGTGGGGAAAGTATGGCTGCTATTCAGTTCAGTCCTAGACCTATGCCCTTTTTAGGTGAACGTGAGCCAACTCCTGTGAAGTACAATCATTTCTGATACTTGTGTCATTGTTTTAGTGCTCCTTGAAGCCGGAGATGGAGAGTGTGTGTACTGAAAGAAGAATATGATTAGTCAGACTGTTCCTGGCTGCTGTTTCTGGgttttgtaatgtgtgtgtgcaatGAGGGCTCAGCTTTTAGGAAAAACTACAATAAAAAGTGGATGCCAAATCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1305960 lncRNA downstream 9024 12891276 ~ 12891608 (-) True G1144978
TU1305957 lncRNA downstream 30507 12869193 ~ 12870125 (-) True G1144975
TU1305912 lncRNA downstream 72811 12827255 ~ 12827821 (-) False G1144939
TU1305913 lncRNA downstream 72988 12827255 ~ 12827644 (-) True G1144939
TU1305908 lncRNA downstream 78207 12821663 ~ 12822425 (-) True G1144936
TU1305930 lncRNA upstream 5896 12908759 ~ 12909558 (-) False LOC110485647
TU1305933 lncRNA upstream 7238 12910101 ~ 12911011 (-) True LOC110485647
TU1305973 lncRNA upstream 29724 12932587 ~ 12933297 (-) True G1144987
TU1306011 lncRNA upstream 147145 13050008 ~ 13053000 (-) True G1145019
TU1306028 lncRNA upstream 222007 13124870 ~ 13125277 (-) False G1145035
XM_036940260.1 mRNA downstream 17325 12880948 ~ 12883307 (-) True LOC110485520
XM_036940258.1 mRNA downstream 17329 12880948 ~ 12883303 (-) False LOC110485520
XM_036940257.1 mRNA downstream 17330 12880948 ~ 12883302 (-) False LOC110485520
XM_036940261.1 mRNA downstream 17330 12880948 ~ 12883302 (-) False LOC110485520
XM_036940259.1 mRNA downstream 17335 12880948 ~ 12883297 (-) False LOC110485520
XM_036940272.1 mRNA upstream 5899 12908762 ~ 13029892 (-) False LOC110485647
XM_036940267.1 mRNA upstream 5899 12908762 ~ 13064606 (-) False LOC110485647
XM_036940263.1 mRNA upstream 5899 12908762 ~ 13083882 (-) False LOC110485647
XM_036940264.1 mRNA upstream 5899 12908762 ~ 13083882 (-) False LOC110485647
XM_036940265.1 mRNA upstream 5899 12908762 ~ 13083882 (-) False LOC110485647
TU1305149 other downstream 282474 12617959 ~ 12618158 (-) True G1144338
TU1305145 other downstream 285073 12615119 ~ 12615559 (-) True G1144335
TU1305143 other downstream 285137 12614976 ~ 12615495 (-) False G1144335
TU1304992 other downstream 534347 12359015 ~ 12366285 (-) False LOC110485629
TU1306029 other upstream 222007 13124870 ~ 13126598 (-) True G1145035
TU1306063 other upstream 262651 13165514 ~ 13171157 (-) False LOC110485655
TU1306064 other upstream 263049 13165912 ~ 13171157 (-) False LOC110485655
TU1306052 other upstream 390072 13292935 ~ 13294143 (-) True G1145046
TU1306128 other upstream 454211 13357074 ~ 13360808 (-) True G1145110

Expression Profile