RNA id: XM_036940269.1


Basic Information

Item Value
RNA id XM_036940269.1
length 6905
RNA type mRNA
GC content 0.45
exon number 14
gene id LOC110485647
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 12908759 ~ 13083882 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAAAGACCGTTTTCTGGGCCACAGGCCGACTTGTTTAAAGGACTTGTTTTTGCTTCCGGTAACACCGAAGAAAAAACAGAGTCGCGCTCTCtcgccctcttctctccctctcgctctctctcactttttttGGAAGCAGAATTTTTAAAGTAAAATGGGTCTTTGAGAGAGTTGGCACATCTCCCTGCGCTATAATGGCCACTGACACGTACCTGGTGAATGAAGACCCTTCGAGAGGCCCCGGGATGCCCGAGTGTTTTCTCGTGTCTGATTCCTACagggatGAATTCCACCCGTTCATCGAGGCCCTGCTGCCCCACGTCCGAGCCTTCTCCTACACATGGTTCAACCTGCAGGCCCGCAAGCGCAAGTACTTCAAGAAGCACGAGAAGAAGATGTCCAAGGAGGAAGAGCGCGCAGTCAAAGATGAACTGCTGGGAGAAAAATCCGAGATCAAACAGAAATGGGCGTCGAGGCTCCTTGCCAAGCTCCGCAAGGACATCCGGCCAGAGTTCCGGGAGGACTTTGTCCTCACCATCACCGGGAAGAAAGCCCCCTGCTGCGTCCTCTCCAACCCCGACCAGAAGGGTAAGATCAGGAGGATCGACTGTCTGCGCCAGGCTGACAAGGTGTGGAGGCTGGACCTGGTGATGGTCATCCTGTTCAAGGGCAGCCCCCTGGAGAGTACGGACGGAGAGCGTCTGGCCAAGTCGCCCCAGTGCTCCAACCACGGCCTGTGTGTCCAGCCGCATCACATCGGGGTCTCCGTCAAAGAGCTGGATCTCTACCTGGCCTACTTCGTCCAGGCACCAGaATCTGGACAATCAGACAGCTCCAGCCAACAAGGAGACACAGACATCAAGCCACCGCCCAATGgGCACCTGAGTTTCCAGGACTGCTTCGTCACCTCAGGAGTGTGGAACGTGGCTGAGCTCGTCAGGGTGTCACAGACTCCTGTAGCCACAGCGTCTGGTCCTAACTTCTCCCTGGCTGACCTGGAGAGTCCTGGCTACTACAACATCAACCAGGTGGCTCTGGGGCGACGCTCCCTCGCATCCCCCCCTTCCACCAGGTACATGTCTGAGGTCGAGCTGTACGCAAACCTTCCACGGAGCTCTAACAAGAGGAAGTCGTTAGACGACAGTGAGCTGGAGAGCCCCACGGACGACGTCTTCTACCCCGGACGCTCCCCAGCCGCAGGCTCCTCCCAGTCCAGCGGCTGGCCCAACGACATGGATGCAGTGCAGCACCATTTGGCCAGTGTGCAGGAGAGGAAGATAAAACATGAACACGATGGAGTGCAGTTTCCTTACCATGGACTGTCCTCGCCTGGTTCTCTTAAGAAGCCGGGGAAGTTTGATTTCAACGCCCTGTCGCCCCAGACGAGGTCCCCCCGCATGACGTTCACACACCACCCGCTGCCCGTGCTGGCAGGAGTGAGACCAGggagTCCCCGTGCCTCAGCGTCAGCTCTccacttcccctcctcctccatcatccAGCAGTCCAGTCCCTACTTCACTCACCCCACCATccgctaccaccaccaccaggacCCGCTCAAGGAGTTTGTCCAATTCGTCTGCGCCGACGGCTCGGGGCAGTCCGGGGGACAGCCTAACGGAGGTGGTCACAGCCAGAGCAAAATGCCAGGCTCCTTCCTGCTGCCCCCGCCGCCCCCAGTGGCGCGCCCCGTGCCCCTCCCCATGCCCGATTCTAAACCAATCAACACACCCCCCGACGGCGGCGGACTCAGCTCGCCCGCATCTCCGTcatACTCCACGGCAGGCTCCACAGCTCCCAACAGGTTTGTCAGCATCGGAGCACGGGACAACTTTCTGAACATCCCCCAGCAGTCTCAGTCTTGGTTCCTCTGACAAGGCCTCCGACTCAACCGCTAGAATTGTGTCATGAGAAAATTGGGAATggaaaaacaacacaacacacaaaacaaaccaACACTGACTACAAACAAACTGCTGACACTAAAGTATTTTTGCTCAACAACCaacaacacaaaaacagaaaataacccccCAGAAGAATACCCATTTCCACGATTTGAACATTTGAACCGGAACAACCATCTCCTTATACAGAAGGCTGAAAAGAGATCGGTTGAAGTGGACAGACTCAGAACGAACGACAGaacgaggaagaagaggaggaagaaagatGAGGAAATGTCACACACAAAACATGTCAGAAAGCAAACAAAAATATGCAACCTGACAACTAACTGACCAATTTCGTTTTAttgttgtttttatattttattttcacaATGAAACTCCATGCAATGGCTGGGAGATCCACCCACACACAACAGTGTAAAACACATAGTTGGCAGAATTTGGTCATTTGAGCTATAGCTATAAACATTGTCACCGCCCAAAAGAACCCATTCTGTAATCCTTTAGTCTCTCCTCCTGACGGTGCTTTAcgtccctgctccctctctcatctGTCAACCAGGTGTCCAGGGTTGCCCCGGCAACGCCCACAGCCTCACACAACCACATCCGACTGGCCTCACTGCCGCTTAATGTACTCAGCCCTgaatcccctccctcctcccttcttctgatTGGCCAAACACTGGGAGACCATCCAATGGTGTGATACCATCTGCACTAGATGGCTGGTTTTAGCTTACCCTCTTGTGAAGAGCGATAGCCAATAGCATGAGCCGAGAGCGAACacaaaacagtcagtcagtcagacatgaGACAGTCAGACATAACAGacagaaagtcagtcagtcagacagacataacagagagacagacagacataagagacagacataacagacagtcagacagacagacagacagacagtcatacAACACTATGCCCTCTTTCGTCCCCTCACCTATGCACTACTGAAACAAATAAGGGAGGAAACAGAGCGATCCAGCAGGTCGCtgaaggcagtgtgtgtgtgtgggcaatgGGCTGTGGCTCTGGCATCCTGGcactcacacatacacgcacTCATGCAGACTCaaagtacgtacacacacacacacacagatcattgTCTCCAGAACCCACACGTCTGGCAGACACAACTGATTCACTGACAATACCATTTTGTCTGTGTGTCCTTCACAGTAACATAATACATGCATAGGATCAACATCATCATGTAATAACTAGCTTTCTTTTGGTTTGTAGCCGTTTTCTTGCATTTCATTTTGTTTGCCGGATTGGTTTTGGTTTTGTCTCACTTGGATTCTTTTGCTTATGTTTGACCTTCTTCCCTAAGATCTTTTTCTTTCATCCGCTTTTTATTTTGCAGAAAAAATATCATCTTCGTTTGCAATAACAGGCATCTCTGAAATCTCTCACAAACACCAGTACAGGAACTTGCGACAACCCCTGCCCTGCTTCACCCTGTAACCACAGTCCATTCACAGTAGCGCCCGGAGGAACACACGCGGACACACCACCGTATCAAAATGCACACTACTAACACCGTCACCCTGATTCCAAACACAAAGGTGAGCCTTTATATACGAGTTTCTCCAAACTGCCTTTGATAATGGTTTTTCATTCATTTTGACATTTGTCATTTTTAATTTGAGATACCTTGTTTTTTTCTATTGTAAATGTGATTTATTAAATTGTTATTGatattgtactttttttttttttatcatgacACAATAATTCAAACAAAAAAAAGCCAAACCTCACAAAATAACTGGACTGCCTAGCTGTTGGTTTCTTCCATGTGCAGGGATAGAATTGTCTGACAGCCCAGGCACTCTGAGTTTATAGTAAAATTAGCTCTATGTACTCAAATCATATATCACAACTATAACAATCTATGGAAGTGCCTCTGTACTCCCCTATCATGCAATTAGTTCAAATTCAGGTTGATGTTTTTGTTCACATATATGCTAAAGCTACAAAGAATGGTGATGTTTCTTCCTATATGGAAACCATTGGCTATAGGACAGAATCTTTGTAGAAGACTGCAAAAttttataaagagagagagagagatcttaaaCATATATATTTATGGTATATGCTCCTTTTTTAAACTTGACTAAAATGAGCTTGTTGGCAGTTTAGTTATTTTCTGAACTCTTGAGCTAGCAGAATTCCATGATGGACAGCACCTCACTGTCACCATGACAATTCAATGAGCACCCACCCAACCTCCACAAATCTACAGTGCAACATTcaaaaaaaacgaaacaaaaatGTCCATGATGCAAAATAGATGAAACATGTCAAAATCGACAATGGAAAAATTGAAGAAAAAAAGTGTTTGTTTTTTGATGGAAAGTATTATTATTGAAAAATATGTGTCGATTGAGCCACGTGCAATGCATTGGGTAGATTCATTGTGTTTTGTCTGTTAGAGATTTTTAAGAAAGCTAAgaagaaaagagaaaaaaaatctatttgtTTCAAGTCCGATGTGCTCCTGGACTCTAAACTAACAGAGCCATATCCTAGTCTTTGTAAGTTGGgggtatttgtttttattttcctttATTGTCTCTTTTTTAATGTTTAACGTGTAATCATTTGTTTAGAAAAAATGTTTGGAGGGGCTGAAGGAAGAAACATTTCTTACAAAACGTTTAAAAACAAATTGAACATGGAATGAAAAACCGGTGAAATGAAAAAACGCCACTTTTACACACTATAAAGTACATTCAAACTATTACAAAATGAATGATAATGAACAAAATAATGACTACCTTTAGGAAACCTCATTTATTACTCCTCTTCTCTATTTCTATTCCTTCTCCTGTTTTAATATTGAGTGGAGGGAGGGGTTCCTATTCCTTCTCCTGTTTTAATATTGAGTGGAGGGAGGGGTTCCTATTCCTTCTCCTGTTTTAATATTGAGTGGAGGGAGGGGTTCCTATTCCTTCCTATATTCCTCTAGTAGGTTGTGAAACAAAAGGCATTTTGGTTCAACCTTTAGATAGGACGAGAGCTGTACTGTAGGCTTATCAATGCCCACAACTACTTCTTCTGATTTCTCCCAGATTATTATACTCCTCTCTCTGAGTCTGAGCAAgggaaaaaaaacaggaaaatgGCAGCTTAGAATTTGTTTCATTTGAGGAGCCAGCCAGTCTGTCAGAACCATGACGTAACGATAGAAATACAGTAGGCCTATGCAAAGTGAGcttccctccaccccttccttctccaccctctccctcattcccctGTAAATTCACCTTGACTAGTGCttgtgctgtagtgtagtttCCCAGCAGTTAAAGGTTGTCCCTTAAAAGTGCCTTTTGTTCACAGACTCCATTTTGTAATCCAGATCGCTCTCCTTTCATTCGAAATAATTCAAGGTAGAGGTGGAAGTGCCCCTaagtgcagatctaggatcagtttactgTATATCCTGACCTGAACCATTAGGAGGGGATATgcaaaactgatcttagatcagtgcTTAGTGAGCAACTTCATCCGACCTCAACCTTTGAAAAATGATCCCCCTCCATTGTATCAACCTTCCCATAAATCCTTTCCCTTTTCAAAATCCGTATATATATAGTACAAAAGGAAACTGGTGTGAATTAGTTATTTACTTTTTATTGATaaatgatgaaaaaaaaatactGAAAAGGCAAAAAAAACTTGTTCTCGTTCCCCCTTGCTCTCTGGCTTTTTTCTTcttccctccgtctcctcctctcctctcctctcctctcctctgtctatctGTTCTCTCGTAGACACCGGAGTAGTCTGtaactgtgtcctctctctctccttccccctccctcccttccttccttccgttGATGGAAGGGGTTGTTGAAAAAAAAATGGCCGAAACTTTTTGTCTTGAGCAGAATGCAGTTAGCTCACGTTATTCTTGTCTGTATTGCCTCTTCTTCACATTGTATACCATTGCCCATCCTCTTCAGCTTCTCCATTCAAACAGCTAATGTAAGTGAACAAATTACACCAATGGGCTTTTGGGGGTGCGCCTGCCCAGTGTAGGGTAGGACTGGGTGTTAGGGGTTATGGGGGTAAAGGTCTTAGGGGGTCAATAATGTTGGGGTAAAGGAGAAATTATAGGGGTACCTTTTGGGTGTTGGGGGGGGCTGCTCTTCTGCTGTGACAAGTTaagagtttttattttatttattttgttttattttattcctttattttttatttttgactTAATTTGGATTTTTGCTTTCATAGTTCCTAACTATCAGGGTATGCCGTCATTGAAACTCTATAAGAGAGTCTTGGACTGTAAATGAAATGCTACAAGCACCTTATAACTACTGGCTGAGAAAAGGGGGTTTGCAATactaccagcacacacacacacctagtcaTGTATCAAATACTCTAAACTCTTGTATTATTATTGTGAGGTTTTATCTAGTGAAGCCAGGAGCAGTATTAGCCATTGGcaaaacacacaccacaacccaccatatAGAGCCAGCATGAACCAGGCTTGAGGCATACTCTCAAGTGAAACGTAGAGATATCAGTTTGAATGCCAGGCTCTAAAAACTTCAGTTtttagattattttttatttttttcgtGGTGTCTAGACAGTACGCCCTTTGACCCCCGACCCTACGCCCTCAGAGCAGAAGAGCCCCACTCATGCCTGTAGCTCTgtttgaaatggcaccctattccctacatagtgcactactttttcacTATTCCCatagggccctgttcaaaagtagtgcactatgtagggaatagggtgccattttaaatGTATCCCATGTCTTTGTGTATAAGAAACACCCCCAGAGCTCTATAGGTGAAATGCATGTGTTAATTACAGTTTCTTTTCCATAAGAAGAAAAACACAGTTTGAGCAGAGCAGCACCTTGATTGAATAAAAGGATGTTCTTGACTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1305966 lncRNA downstream 5899 12900632 ~ 12902863 (-) False LOC110485643
TU1305968 lncRNA downstream 6679 12900632 ~ 12902083 (-) True LOC110485643
TU1305965 lncRNA downstream 7657 12900632 ~ 12901105 (-) False LOC110485643
TU1305960 lncRNA downstream 17154 12891276 ~ 12891608 (-) True G1144978
TU1305957 lncRNA downstream 38637 12869193 ~ 12870125 (-) True G1144975
TU1306028 lncRNA upstream 40988 13124870 ~ 13125277 (-) False G1145035
TU1306061 lncRNA upstream 78008 13161890 ~ 13162308 (-) True G1145051
TU1306065 lncRNA upstream 94501 13178383 ~ 13178674 (-) True LOC110485655
TU1306075 lncRNA upstream 103461 13187343 ~ 13187920 (-) True G1145064
TU1306080 lncRNA upstream 105546 13189428 ~ 13213171 (-) True G1145069
XM_021556748.2 mRNA downstream 4081 12900622 ~ 12904681 (-) False LOC110485643
XM_036940260.1 mRNA downstream 25455 12880948 ~ 12883307 (-) True LOC110485520
XM_036940258.1 mRNA downstream 25459 12880948 ~ 12883303 (-) False LOC110485520
XM_036940257.1 mRNA downstream 25460 12880948 ~ 12883302 (-) False LOC110485520
XM_021559193.2 mRNA upstream 57861 13141743 ~ 13143937 (-) True LOC110487275
XM_036940286.1 mRNA upstream 60193 13144075 ~ 13151476 (-) False LOC110516103
XM_036940287.1 mRNA upstream 60193 13144075 ~ 13151846 (-) True LOC110516103
XM_021556753.2 mRNA upstream 70254 13154136 ~ 13161168 (-) True LOC110485650
XM_036940288.1 mRNA upstream 79934 13163816 ~ 13178960 (-) False LOC110485655
TU1305149 other downstream 290604 12617959 ~ 12618158 (-) True G1144338
TU1305145 other downstream 293203 12615119 ~ 12615559 (-) True G1144335
TU1305143 other downstream 293267 12614976 ~ 12615495 (-) False G1144335
TU1304992 other downstream 542477 12359015 ~ 12366285 (-) False LOC110485629
TU1306029 other upstream 40988 13124870 ~ 13126598 (-) True G1145035
TU1306063 other upstream 81632 13165514 ~ 13171157 (-) False LOC110485655
TU1306064 other upstream 82030 13165912 ~ 13171157 (-) False LOC110485655
TU1306052 other upstream 209053 13292935 ~ 13294143 (-) True G1145046
TU1306128 other upstream 273192 13357074 ~ 13360808 (-) True G1145110

Expression Profile