RNA id: XM_036941504.1


Basic Information

Item Value
RNA id XM_036941504.1
length 3119
RNA type mRNA
GC content 0.49
exon number 3
gene id mosmoa
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 53607021 ~ 53638313 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagagagagagagagctgttgtgTCTGTGGAACGCACTGCGTGAGGCACGGTGTTCGGTTGATAGGGGGCCAAGCTAGTGGGCTAATCGGGGAAAGCATAATCACCACCTCTCCTAGCGGCTTTAATAATATCGTATTTCCATATAAAGATTATGCGAAAGCCGCAGAGCCTGCTCGAGCTGCCTTGGTTCCTACTTCGCTATGTCCGCACCAGAGCTTGCTAGCTAGCGGTCTATTTACACTACAGATGCTATTCCAGCAGCGGAGAAGGGGGCATGAATAAGCAAGAGGGAGGATGGGTTCTCGTTTTCCTGACGGCTAGCTAGCCTTAGAGCTTCGCTGAAAACAAGGACATACTGAAGGCACAGCATTATTCGATTATTTAGTACTTCTGTCTGACGGAGTTTTGTTCGTGAAATGGTTTAAAGTACTTATTCAAATGGGGGTTCGGCCGTCAAGCACCCTCTCTGGGTTGTTGTTCGGCACACAGAGTTCGAATGTGGGAAatagctagctaggtggctagctaTCCGGCTAGTCTCAATAACCAAATGCTGCTGCTACCGTGCAGATCCGAGCGAGAACACCAGCGACTGGAGACTTGGGCCCTGACGTTGCGCCAGCTCCTTTTGCTTTATCGGAGGAAGATTCGGGTCGAAACGATGGTCGTTTGAGATGTGATTTTTTTCCTCCGTTTTTAGCCATATGTAAGCGGAATGAAGGTGTGTTGATTTGCTGTTGCTGCCATGTCCAAATGAATAATGACAGGCTGAACCTCCAAACCAGTTGAATCTCTTTTGAAGGGGGTGAGGTGGACTGATAACTATCTAACGGAAACATATATCTAAAAACTGTATTTCTGAGGTTTACACTCCTTGGTCTTACCTGGAACTCTAAGCCACGTCTTTCATATCTGCTCATTTAAAGCACACAGACTTGAGCTGCAAATATGGATAAATTAACAATTATATCAGGATGTCTGTTTCTGGCAGCGGATATCTTTGCAATCGCAAGCATTGCAAACCCCGACTGGATCAACACAGGCGAATCTGCAGgtgccCTGACGGTAGGCCTGGTGCGGCAGTGCCAGACCATCCACGGTCGGGACCGCACTTGTATCCCCCCGCGGCTTCCCCCCGAGTGGGTCACCACGCTCTTCTTCATCATCCTGGGTATCATCTCCCTCACGGTGACCTGTGGCCTGCTGGTGGCATCCCACTGGCGCCGCGAGGCCACCAAATACGCCCGCTGGATTGCCTTCACCGGGAtgaTCCTGTTCTGTATGGCGGCGCTCATCTTCCCCATCGGCTTCTACATCAACGAGGTGGGTGGCCAGCCATACAAGCTGCCCAACAACACGGTGGTGGGCTCCTCCTACGTCCTCTTTGTCCTCTCCATCTTCTTCACCATAGTGGGACTGCTGTTCGCAGGCAAGGTGTGCCTGCCCGGCTGACTGCAGCTACCACTCTGCCACCTGGACTTTAAGCTGGGGCCGAGGAGAAACATACCAAGGAGATCAATAAAATGGAGGAAAAGAAAAATGGACGACTAAAAAGAAAAACACTGGCCAGAAAGCAGGGATGGGATGTCTCTGACGGACGGTGTGACGATATGCAGCTGGGGCGGTTAACGCGGAATAACAAACTAACTGAGATGAATAGACATGGACGAATATGGACGCTGTCGAACTGACTCAGGCTTTTTTTTCCCTCTCTGCCTTTGCTTAtttaaaacatgttatttttacATTGTTGTTGTTGCACTTTGGAGAGCGATGTGGGAGGCACACGTCCACTCcatgggggggtgaagaggagtgggggggggTTGGAATGACCGCTGTACTTTCCCCAAACCCCCTGCCGTTGCCACGGCGAAAGTAACTATGGCGTCACACCTTTCGGAGGATGTCCACTTCACCCTTCCTGCCCAGCGAGAAAACAAACCGTTGTCATCTCAACTGTTCCTGTTGCTATTTTTGGCTTCTTACACTATTTCAGTTGTTTTAGTTTCTTCCATTTAGTGTTTTTTGGGGTTGTtgctttctcctctccccctttttcACTGAGGTGAAGTTTGGGCCAACGAACCTCTGGAGGAGCTGTAAAGGTCTAGGCTGCTGCTGGGGTcattgtctctctgcctccccatGTGTGGTCTGGGACAAGAGTCACTTCAGCCATGGTTAGGCAGTAACTAGGGATGGGGTTATTTGGAGTAGAGGGGCAAGGTTGGTTGAGATGACATCCTAGCTTGCTGGGTATGAGCAAGTCCCCTTTGGAAGAGGGAGGGTGGACTGCTACATTGGCCTTTCCATCttcaccctaaccttaaccccagcACCATGACCCATATAATCCATGGGATTTAGACAGGTGCGCCGTTccagagaggggagggtaggaCCCCAGGCCCTGACGACCAAGGTTCCCTAATTAACCAGGCACCACACAGTAAGTCAAGCACCTACCAGCTGCTCTACAGGAAAGGAAAAAGGGAATGAAGACTGAGAGCAGCTGGATTATTATGAAACATGGATGGGATCAGGCAGGAGGGATGTTTTGTTTTGCTTTGTAAAATAGTAATAAAAGGCATCAGGGACTGCAGGTCAGGTCGTTGTGTGGGGCTGTGCCTCACTACTGTGCTGTGCCCGATGcctgtgaaacacacacacacacacacactaacagatgCACAAAAGActcgcacgcaaacacacacacgtgtttcGGGCTCAATCTCCAAGTCATGGTGAAGTATTTGTTGTCCATTTCCATTCCTGCTCAGCTTTTCTTTATGTTGGTCTGTATAATATGGATAATGAAGAAGTCCTTTCTGGTTCCTAGTTTGATTTGTTGTTGTGCCATGATCAGAATTTCTGTTTTAGGAAGCACTGTGCATTCAAGGGTATAGCTAATAGCAGAAGAGGCAccacaaatgtataaaaaaataacttCTTACCTCATATTTTTTTCTTATTCAAACTACTACTATTGTGTTTTCCAAACCATGGCGATGAGTTCCCTAGAAATGGTATTGTCTTGATCAGGCGGCTAGGCATAAAGCTTGTGATCAACGCAAATGATTTATCTTTCACTGAATAAAAAGAGAAAAAAGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1354683 lncRNA downstream 57705 53549099 ~ 53549316 (-) True G1187826
TU1354680 lncRNA downstream 59524 53547287 ~ 53547497 (-) True G1187823
TU1354678 lncRNA downstream 125052 53481699 ~ 53481969 (-) True G1187821
TU1354665 lncRNA downstream 163722 53442876 ~ 53443299 (-) True G1187808
TU1354601 lncRNA downstream 251571 53308264 ~ 53355450 (-) True G1187750
TU1354633 lncRNA upstream 54915 53693228 ~ 53697259 (-) True G1187779
TU1354763 lncRNA upstream 146954 53785267 ~ 53786453 (-) True G1187893
TU1354765 lncRNA upstream 153994 53792307 ~ 53792865 (-) True G1187895
TU1354802 lncRNA upstream 239213 53877526 ~ 53877991 (-) True G1187930
TU1354803 lncRNA upstream 240545 53878858 ~ 53879075 (-) True G1187931
XM_036941500.1 mRNA downstream 9549 53566463 ~ 53597472 (-) False vwa3a
XM_036941501.1 mRNA downstream 9549 53566463 ~ 53597472 (-) False vwa3a
XR_005035598.1 mRNA downstream 9549 53568022 ~ 53597472 (-) True vwa3a
XM_036941502.1 mRNA downstream 13813 53566463 ~ 53593208 (-) False vwa3a
XM_036941499.1 mRNA downstream 42355 53551060 ~ 53564666 (-) True sdr42e2
XM_036941505.1 mRNA upstream 3581 53641894 ~ 53658826 (-) True LOC110486787
XM_036941506.1 mRNA upstream 25189 53663502 ~ 53679228 (-) True LOC110515632
XM_021558608.2 mRNA upstream 41783 53680096 ~ 53690204 (-) True LOC110486790
XM_021558610.2 mRNA upstream 60926 53699239 ~ 53708270 (-) True LOC110486791
XM_021558619.2 mRNA upstream 74810 53713123 ~ 53725266 (-) False LOC110486794
TU1353318 other downstream 947212 52659331 ~ 52659809 (-) True G1186670
TU1352962 other downstream 1576361 52025918 ~ 52030660 (-) True G1186381
TU1352963 other downstream 1578047 51924963 ~ 52028974 (-) False G1186381
TU1352758 other downstream 1595810 52010690 ~ 52011211 (-) True G1186216
TU1352690 other downstream 2116780 51489777 ~ 51490241 (-) True G1186154
TU1354775 other upstream 168331 53806644 ~ 53810757 (-) True si:ch73-374l24.1
TU1355055 other upstream 810570 54448883 ~ 54450020 (-) True G1188147
TU1355033 other upstream 827220 54465533 ~ 54470838 (-) True G1188127
TU1355100 other upstream 961088 54599401 ~ 54600449 (-) True G1188186
TU1355133 other upstream 1106112 54744425 ~ 54748658 (-) True LOC110486825

Expression Profile