RNA id: TU1304416


Basic Information

Item Value
RNA id TU1304416
length 818
RNA type TUCP
GC content 0.49
exon number 2
gene id G1143743
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 11951595 ~ 11952568 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gggggtaccagtacagagtcaatgtggaggctatatacagggggtaccggtacagagtcaatgtggaggctatatacagggggtaccggtacagagtcaatatggaggctatatacagggggtaccggtacagagtcaatatggaggctatatacagggggtaccagtacagagtcaatgtggaggctatatacagggggtaccagtacagagtctatgtggaggctatatacagggggtaccggtacagagtcaatgtggaggctatatacagggggtaccggtacagagtcaatatggaggctatatacagggggtaccagtacagagtctatgtggaggctatatacagggggtaccggtacagagtcaatgtggaggctatatacagggggtaccggtacagagtcaatatggaggctatatacagggggtaccagtacagagtctatgtggaggctatatacagggggtaccggtacagagtcaatgtggaggctatatacagggggtaccagtacagagtcaatgtggaggctatatacagggggtaccggtacagagtcaatgtggaggatatatacagggggtactggtacagagtcaatgtggaggatatatacagggggtactggtacagagtcaatgtggaggctatatacagggagtaccggtacagagtcaatgtggaggctatatacagggggtaccggtacagagtcaatgtggaggctatatacagggggtaccagtacagagtcaatgtggaggctatatacagggggtaccagtacagagtcaatgtggaggctatatac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1304402 lncRNA downstream 18014 11933082 ~ 11933581 (-) True G1143729
TU1304357 lncRNA downstream 113080 11837392 ~ 11838515 (-) True G1143688
TU1304351 lncRNA downstream 119190 11831745 ~ 11832405 (-) True G1143682
TU1304324 lncRNA downstream 178055 11773047 ~ 11773540 (-) False G1143657
TU1304326 lncRNA downstream 178055 11773047 ~ 11773540 (-) True G1143657
TU1304441 lncRNA upstream 44354 11996922 ~ 11998113 (-) True G1143767
TU1304460 lncRNA upstream 68562 12021130 ~ 12032311 (-) True G1143785
TU1304468 lncRNA upstream 76541 12029109 ~ 12030164 (-) True G1143791
TU1304476 lncRNA upstream 93738 12046306 ~ 12047107 (-) True G1143799
TU1304407 lncRNA upstream 109142 12061710 ~ 12062226 (-) True G1143734
XM_036940214.1 mRNA downstream 13169 11906902 ~ 11938426 (-) True LOC110485617
XM_036940211.1 mRNA downstream 23034 11906902 ~ 11928561 (-) False LOC110485617
XM_036940212.1 mRNA downstream 23034 11906902 ~ 11928561 (-) False LOC110485617
XM_036940210.1 mRNA downstream 45812 11892173 ~ 11905783 (-) True LOC110487235
XM_036940209.1 mRNA downstream 45859 11892173 ~ 11905736 (-) False LOC110487235
XM_021556731.2 mRNA upstream 406285 12358853 ~ 12360330 (-) False LOC110485629
LOC110487266 mRNA upstream 463449 12416017 ~ 12448563 (-) True LOC110487266
XM_021556737.2 mRNA upstream 759116 12711684 ~ 12720418 (-) True LOC110485637
XM_036940241.1 mRNA upstream 769974 12722542 ~ 12735288 (-) False LOC118938209
XM_036940244.1 mRNA upstream 769974 12722542 ~ 12743403 (-) False LOC118938209
TU1304298 other downstream 140364 11800470 ~ 11811231 (-) False LOC110485539
TU1304299 other downstream 140364 11800470 ~ 11811231 (-) False LOC110485539
TU1304300 other downstream 140364 11800470 ~ 11811231 (-) True LOC110485539
TU1304109 other downstream 457255 11455574 ~ 11494340 (-) True LOC118938427
TU1304123 other downstream 522230 11427690 ~ 11429365 (-) True LOC110485554
TU1304446 other upstream 90540 12043108 ~ 12081882 (-) True G1143771
TU1304990 other upstream 405825 12358393 ~ 12360279 (-) False LOC110485629
TU1304988 other upstream 406288 12358856 ~ 12360279 (-) False LOC110485629
TU1304995 other upstream 406288 12358856 ~ 12360279 (-) False LOC110485629
TU1304987 other upstream 406447 12359015 ~ 12360279 (-) False LOC110485629

Expression Profile