RNA id: TCONS_00043611


Basic Information

Item Value
RNA id TCONS_00043611
length 749
RNA type processed_transcript
GC content 0.46
exon number 7
gene id XLOC_022056
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 480423 ~ 493384 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTCTGAAGCTCTTTTAAAAACCTTGAAAACACTGGATTAAATATCAAGAACTTCATTTTCATGCCAATAGTGTTTTAGTTTTGACAGAAGTGTTTGTGCGTTTGCTGACAGCACTGGATAGCCAATAACCTGTTTGGTCTGGCGTTTGCTCTGAACGGCGTGGAGCTGCTGCACCTCAATAACGTCAGCACCGGATGCATTCTGCTGGGAGGACTCTTCGTTTACGACGTCTTCTGGGTTTTTGGCACTAATGTTATGGTGACAGTTGCCAAGTCCTTTGAAGCCCCGATCAAGTTGGTTTTCCCTCAAGATTTGCTGGAGAAAGGTTTGGGCGCCAGTAACTTTGCCATGCTGGGACTCGGGGACATTGTTATTCCAGgaATTTTTATTGCTCTGCTCCTGCGCTTTGATGTCAGTCTGAAGAAGAACACACGAACATACTTCTACACCAGCTTCCTGGCTTACATTTTTGGCCTGGGTCTGACCATTTTCGTGATGCACACCTTTAAACATGCTCAGCCTGCTTTGCTGTACCTGGTGCCTGCTTGTGTTGGATTTCCAGTGCTGGTGGCACTTGTTAAAGGAGAACTAACCGAGATGTTCAGGTACGAGGAGGAAACGCCATCAAAAGAAGAGACGACCGAATctgaaaaagacaaataaaagccCCAAATCAGCCCTCATTCATGTTTTGCATTTGTCATAGTGATGTGGTCGCGCACAGACTCCTCTCCGTCTGCTCATGGCGG

Function

GO:

id name namespace
GO:0006465 signal peptide processing biological_process
GO:0043523 regulation of neuron apoptotic process biological_process
GO:0033619 membrane protein proteolysis biological_process
GO:0071556 integral component of lumenal side of endoplasmic reticulum membrane cellular_component
GO:0071458 integral component of cytoplasmic side of endoplasmic reticulum membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004190 aspartic-type endopeptidase activity molecular_function
GO:0042500 aspartic endopeptidase activity, intramembrane cleaving molecular_function

KEGG:

id description
ko01002 Peptidases and inhibitors

ZFIN:

id description
ZDB-GENE-020802-3 Predicted to enable aspartic endopeptidase activity, intramembrane cleaving. Acts upstream of or within regulation of neuron apoptotic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of cytoplasmic side of endoplasmic reticulum membrane and integral component of lumenal side of endoplasmic reticulum membrane. Is expressed in several structures, including alar plate midbrain region; axial mesoderm; digestive system; immature eye; and nervous system. Orthologous to human HM13 (histocompatibility minor 13).

Ensembl:

ensembl_id ENSDART00000130276

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044922 lncRNA downstream 111030 369131 ~ 369997 (-) True XLOC_022053
TCONS_00044709 lncRNA downstream 227798 250690 ~ 253229 (-) False XLOC_022049
TCONS_00044923 lncRNA upstream 339933 829130 ~ 844398 (-) False XLOC_022064
TCONS_00044924 lncRNA upstream 351338 840535 ~ 844371 (-) False XLOC_022064
TCONS_00044925 lncRNA upstream 529687 1018884 ~ 1034033 (-) True XLOC_022068
TCONS_00044710 lncRNA upstream 588719 1077916 ~ 1079365 (-) True XLOC_022071
TCONS_00044926 lncRNA upstream 613998 1103195 ~ 1106137 (-) True XLOC_022072
TCONS_00043609 mRNA downstream 2826 457569 ~ 478201 (-) True XLOC_022055
TCONS_00043607 mRNA downstream 28662 423351 ~ 452365 (-) False XLOC_022054
TCONS_00043608 mRNA downstream 43560 424140 ~ 437467 (-) True XLOC_022054
TCONS_00043605 mRNA downstream 129092 320624 ~ 351935 (-) False XLOC_022052
TCONS_00043606 mRNA downstream 147570 320813 ~ 333457 (-) True XLOC_022052
TCONS_00043612 mRNA upstream 6317 495514 ~ 524780 (-) True XLOC_022057
TCONS_00043613 mRNA upstream 37305 526502 ~ 545942 (-) True XLOC_022058
TCONS_00043614 mRNA upstream 57910 547107 ~ 552539 (-) True XLOC_022059
TCONS_00043615 mRNA upstream 81320 570517 ~ 574733 (-) False XLOC_022060
TCONS_00043616 mRNA upstream 81709 570906 ~ 574727 (-) True XLOC_022060
TCONS_00043618 other upstream 129356 618553 ~ 621086 (-) True XLOC_022061
TCONS_00043637 other upstream 729185 1218382 ~ 1218501 (-) True XLOC_022077
TCONS_00043654 other upstream 2566784 3055981 ~ 3056096 (-) True XLOC_022096
TCONS_00043689 other upstream 4427708 4916905 ~ 4925625 (-) False XLOC_022113
TCONS_00043690 other upstream 4427758 4916955 ~ 4925623 (-) False XLOC_022113

Expression Profile

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