RNA id: TCONS_00043643


Basic Information

Item Value
RNA id TCONS_00043643
length 2608
RNA type mRNA
GC content 0.46
exon number 7
gene id XLOC_022084
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 1644754 ~ 1660708 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

atatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatttttttttttttttttttttttaagtcataaaACTTTAAAAGTCCTGTAATAACCCCCAGTGGCACTCCCGGGTTTTCCAGTGATTATTTCAGTGAGTGCTCTATAGAGGGTTCATTTTTaactatttccttttttttttttgaatgactaAAACAGATATCAAAtgctaatttaattaaaatatttatatataaatgttcaagtttaattattgaaatgtttagaGTCTAATAACTGtctttgtgtatttttcttttttcaggcATCAGGTACGGCTGATCTGGAGCAAAAAACAGTATCTGTTCAAATCGAAATCCACACTCATTAAAAAATGTCGTTTTTAAGCTGAGATTTGTTAAAACCTCTTtcgttttcttttgtttttcaggCAGCTTGATGACTGTGAATGTGTTTACGGTGACGTCAAAGAGTGCAGTGCTGCGCTGGAGCAGATATGATGGTGCGCTGTCCTACAGAGTTACAGCTTCTCTACGCAACTCTCCAGTGCCTCTGGTCTTTGCTAGTTTTGGACAAAACACTGTTCTGGGATCTGTTAACTCCCTGAACCCCAACACGGCTTACACCTTTCGTGTGGAGGCACTGGATAGCCTCATGAACGGACTGGCAGACGCTAATGTGGATGGATCTACAGCTCCGGATGTGCCGTCCATCCTGATGGCCTCCTCCAAAGAGAGTCCCAGTATCACAGTGGAGTTCACTGAGGTCAGCGGAGCCACTTCATACATCCTGCGCGCAGAGACCAGCGACGGCTCTTTCTTCACAGAGATCCAAGTTTCCAGCTCTCCGGGGACCGTCACCGGCCTGCAGCCATACACACTCTACAGTCTCAGCGTCATGTCCGTCAACAGCGCAGGCCGGAGCCAGCCATCCATCTCCGTGGAGGCTAAGACAGTCCTCCCTGCACCGCAGCTCAAACCCAGCTCTCCCAGTAACAGCAGCATCCTGGTGAAGTGGGATCCGGTGAACAACACTGTGCTCTACAGCCTCAGCATCATCAATGACATCTCGTACAGTCGCAGTCGCATCAACACCACCGGCACAGAGCTTCTCTTTCCAGATCTAGAAGCAGGAACTCGCTATTGCATTAAGGGGAATTCCTGGAGTCCTGAACACATTGCCGGAGACGACTTCACCATTTGCCAGATCACACGTTCTCCAACTCCTCAGTCAGTTGCTGTAGTGGTGACCAGCACCCCTGAGGCTGGTATAGTTGTGTCCTGGGATTCTGCCCAGGGTGCAGAGCAGTATGTGGCCTGGAGCTCGACCGGACACAACTGCTCTTCGTCCACGAACTCCTGCACCCTGATTCCTCTGATCTGCGGAGAGACAAAATCTGTCACAGTGACTGCGGTCAACCAGGCTGGAAGTAGTATCCCCTCATACCCAGTGCAGATCATTTCATTCCCTTGTCCCCCGCAGCCCATTTGGGTGGAGGAGGCAGTGCCCGGTAACTGCTCTGTGAAGTGGAGCTCAGTCCCTCATGCAGACTACTACACCACCTTTATTAAGAGCGACGACGGCATCGAGGGGACGTGCAACTCAACCAATCCATTCTGTCAGTTCCACTGCAACTGCGGCTACTCGTACATCATGACTGTGTTTGCGCACAACCATGCTGGATCCAGTCCTCCAGGACCGCTCCTCAACCACACCACCTTGCCTTGCTGTCCAGAGCTCACCACGGTGTCTGCAGTTTCTTGGGAGACGTTGATGATCGAGTGGTCCCCTGTGCGCGGTGCAGATCTATATGAGACGCGTGCTGTAGATTCAGTGCAGCCGGTTTTGTGTAACGACACGGCTCCCAAATGTGCCCTTTCTGACCTTGCTTGCAACACCAATTACAGTGTCGTCGTCATACCGTGCAATGACATAAGTGGCTGCAACCTCACCTGCCGTCCACAAGTGCATGAAACAGCTCCATGCATGCCTGAGATCACCAGTGTGAGCCAGAGTAACACGTCAGGTGTGTTGATCACCTGGACTTCAGATAACACGCTCGCCAACTATACCGTCACTGTGATTGGCCAAGTAGGTGACACACACATCTGTCAGTCAAATGGTACTTCCTGTCAGGTAACCGACCTGCCCTGTGGCTCCATCTATGAAGTCAGCGCCACAGCCAAAACCTCCGCTGGAGAAAGCATGCCCAGCTACACCGTTCCACTGGAAACAGGTCAGGTTTACAgcacaattcatttattcatttaccgtttatgcaaggtgtttgtaatgcagaaTGGTCACgggacagtaaatctgacattattctctcctctggctgccgttatcagtctcacactattgttttcctctttctgaaagtcttgataaaacCATCCTTGAGTTTTTCTGCCATGTTTTCagcaaatattattgtaaataaaggATTTGTTGTACTCACGCATTCCCTTACATGATGACTTCTGTTGCTGGGTCCATAATAGATATTTAGATAGATATCCATAATATATCCataatagatatttttaaaaaaaatgttgaacctgtaaacactg

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000186227

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044928 lncRNA downstream 4447 1513309 ~ 1640307 (-) False XLOC_022079
TCONS_00044934 lncRNA downstream 4447 1636944 ~ 1640307 (-) False XLOC_022079
TCONS_00044933 lncRNA downstream 4447 1636944 ~ 1640307 (-) True XLOC_022079
TCONS_00044932 lncRNA downstream 4450 1636944 ~ 1640304 (-) False XLOC_022079
TCONS_00044931 lncRNA downstream 4492 1636944 ~ 1640262 (-) False XLOC_022079
TCONS_00044935 lncRNA upstream 504410 2163390 ~ 2168177 (-) False XLOC_022087
TCONS_00044936 lncRNA upstream 505794 2164774 ~ 2168177 (-) True XLOC_022087
TCONS_00044937 lncRNA upstream 586469 2245449 ~ 2256787 (-) False XLOC_022088
TCONS_00044938 lncRNA upstream 597149 2256129 ~ 2257461 (-) True XLOC_022088
TCONS_00044712 lncRNA upstream 761554 2420534 ~ 2421706 (-) True XLOC_022089
TCONS_00043642 mRNA downstream 56799 1586287 ~ 1587955 (-) True XLOC_022083
TCONS_00043641 mRNA downstream 61561 1580294 ~ 1583193 (-) True XLOC_022082
TCONS_00043640 mRNA downstream 73072 1561931 ~ 1571682 (-) True XLOC_022081
TCONS_00043639 mRNA downstream 87559 1526708 ~ 1557195 (-) True XLOC_022080
TCONS_00043638 mRNA downstream 295821 1347806 ~ 1348933 (-) True XLOC_022078
TCONS_00043645 mRNA upstream 267582 1926562 ~ 2037659 (-) True XLOC_022085
TCONS_00043646 mRNA upstream 391379 2050359 ~ 2081554 (-) False XLOC_022086
TCONS_00043647 mRNA upstream 391379 2050359 ~ 2099350 (-) True XLOC_022086
TCONS_00043648 mRNA upstream 787998 2446978 ~ 2448234 (-) True XLOC_022090
TCONS_00043649 mRNA upstream 843201 2502181 ~ 2513300 (-) True XLOC_022091
TCONS_00043637 other downstream 426253 1218382 ~ 1218501 (-) True XLOC_022077
TCONS_00043618 other downstream 1023668 618553 ~ 621086 (-) True XLOC_022061
TCONS_00043611 other downstream 1155557 481027 ~ 489197 (-) True XLOC_022056
TCONS_00043654 other upstream 1397001 3055981 ~ 3056096 (-) True XLOC_022096
TCONS_00043689 other upstream 3257925 4916905 ~ 4925625 (-) False XLOC_022113
TCONS_00043690 other upstream 3257975 4916955 ~ 4925623 (-) False XLOC_022113
TCONS_00043705 other upstream 3552041 5211021 ~ 5365184 (-) False XLOC_022119
TCONS_00043706 other upstream 3641299 5300279 ~ 5365345 (-) True XLOC_022119