RNA id: TCONS_00044941


Basic Information

Item Value
RNA id TCONS_00044941
length 1028
lncRNA type antisense_over
GC content 0.45
exon number 3
gene id XLOC_022093
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 2842399 ~ 2844254 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCCTGAGGAGATCAAACACACGTAAAGGATGAAGTAGAGGTGTAGTTAGGAGATGCAGAGGGTGTGTAGTAAAGGGTGGAGTAGAGGTGTAGTTACCAGAATACCAAAAAGATAGGGTGTAATAAAGTGTGTAGTAGAGGTGTAGTTACTAGATGCAGAGGGCGTGTAGTAAAGGGTGGAGTAGAGAGAGGTGTAGTTACCAGATGCAGAGGGTGTGTAGTAAAGGGTGGAGTAGAGGTGTAGTTACCAGAAGGAGAGGGTGTAGTAGAGGGTAGAGTGGAGGTGTAGTTACCAGAAGAAAATGTAGTAAAGGTGTAGTAAAGGGTGTAGTGGATGTGTCGTTACCAGAAGGAGAGGGAATAGTAGAGGTGTAGTAAGTGTGTAGTAGAGGTGTCGTTACCAGGAGAGGGTGTAGTAGAGGGTAGAGTAGAGGTGTAGTTACCAGAAGAAGATGTAGTAAAGGTGTATTAAAGGGTGTAGTGGATGTGTCGTTACCAGAAGGATAGGGTGTAGTAGAGGTGTCGTTACAAGAAGGAGAGGGAATAGTAGAGGTGTAGTAAGGGTGTAGTAGAGGTGTTGTTACAAGAAGGAGAGGGTGTAGTAGAGGTGAAGTTACCAGAATACCAAAAAGATAGGGTGTATTAAAGGGTGTAGTAGAGTTATAGTTACCAGACCCAGAGGGTGTGTAGTAAAGGCCGGAGTAGAGGTGCAGTTACCAGAAGGAGAGGGTGTAGTAGAGGGTAGAGTAGAGGTGTAGTTACCAGAAGAAAATGTAGTAGAGTTGTAGTAAAGGGTGTAGTAGAAGTGTCGTTACCAGGAGAGGGTGTAGTAAGGGTGTAGTAGAGGTGTAGTAAGGGTGTAGTAGAGGTGTCATTACCATAAAGAGAGGGAGTAGTAGAGGTGTAGTAAGGGTGTAGTAGAGGTGTCGTTACTAGAAGGAGAGGGTTTACTAGAGGAGTAGTAGTGGTGTAGTTACCAGAAGGAGAGGGTGTAGTCTCCTACAAAGGTCTCGCTCTCCCGCACTAGGA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044939 lncRNA downstream 113390 2728104 ~ 2729009 (-) True XLOC_022092
TCONS_00044712 lncRNA downstream 420693 2420534 ~ 2421706 (-) True XLOC_022089
TCONS_00044938 lncRNA downstream 584938 2256129 ~ 2257461 (-) True XLOC_022088
TCONS_00044937 lncRNA downstream 585612 2245449 ~ 2256787 (-) False XLOC_022088
TCONS_00044936 lncRNA downstream 674222 2164774 ~ 2168177 (-) True XLOC_022087
TCONS_00044942 lncRNA upstream 115964 2960218 ~ 2992107 (-) True XLOC_022095
TCONS_00044943 lncRNA upstream 606744 3450998 ~ 3451379 (-) True XLOC_022098
TCONS_00043663 lncRNA upstream 829455 3673709 ~ 3680954 (-) True XLOC_022100
TCONS_00044944 lncRNA upstream 883836 3728090 ~ 3730606 (-) True XLOC_022102
TCONS_00043668 lncRNA upstream 908608 3752862 ~ 3759457 (-) False XLOC_022103
TCONS_00043649 mRNA downstream 329099 2502181 ~ 2513300 (-) True XLOC_022091
TCONS_00043648 mRNA downstream 394165 2446978 ~ 2448234 (-) True XLOC_022090
TCONS_00043647 mRNA downstream 743049 2050359 ~ 2099350 (-) True XLOC_022086
TCONS_00043646 mRNA downstream 760845 2050359 ~ 2081554 (-) False XLOC_022086
TCONS_00043645 mRNA downstream 804740 1926562 ~ 2037659 (-) True XLOC_022085
TCONS_00043650 mRNA upstream 28601 2872855 ~ 2880353 (-) False XLOC_022094
TCONS_00043652 mRNA upstream 29180 2873434 ~ 2901167 (-) False XLOC_022094
TCONS_00043651 mRNA upstream 29180 2873434 ~ 2901167 (-) False XLOC_022094
TCONS_00043653 mRNA upstream 32686 2876940 ~ 2880191 (-) True XLOC_022094
TCONS_00043655 mRNA upstream 561411 3405665 ~ 3409140 (-) False XLOC_022097
TCONS_00043637 other downstream 1623898 1218382 ~ 1218501 (-) True XLOC_022077
TCONS_00043618 other downstream 2221313 618553 ~ 621086 (-) True XLOC_022061
TCONS_00043611 other downstream 2353202 481027 ~ 489197 (-) True XLOC_022056
TCONS_00043654 other upstream 211727 3055981 ~ 3056096 (-) True XLOC_022096
TCONS_00043689 other upstream 2072651 4916905 ~ 4925625 (-) False XLOC_022113
TCONS_00043690 other upstream 2072701 4916955 ~ 4925623 (-) False XLOC_022113
TCONS_00043705 other upstream 2366767 5211021 ~ 5365184 (-) False XLOC_022119
TCONS_00043706 other upstream 2456025 5300279 ~ 5365345 (-) True XLOC_022119