RNA id: TCONS_00043654


Basic Information

Item Value
RNA id TCONS_00043654
length 116
RNA type rRNA
GC content 0.53
exon number 1
gene id XLOC_022096
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 3055981 ~ 3056096 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACCACAGCCATGTCACTCTGCAGGCCAAGACTGGATCCTCACTGAAGCGAAGTACGGCTGAACCTGGTCAGTACCTACAtggtagaccacatgggaaaactaggctgCTGGTGGAA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000174652

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044942 lncRNA downstream 63874 2960218 ~ 2992107 (-) True XLOC_022095
TCONS_00044941 lncRNA downstream 211727 2842399 ~ 2844254 (-) True XLOC_022093
TCONS_00044940 lncRNA downstream 212097 2842399 ~ 2843884 (-) False XLOC_022093
TCONS_00044939 lncRNA downstream 326972 2728104 ~ 2729009 (-) True XLOC_022092
TCONS_00044712 lncRNA downstream 634275 2420534 ~ 2421706 (-) True XLOC_022089
TCONS_00044943 lncRNA upstream 394902 3450998 ~ 3451379 (-) True XLOC_022098
TCONS_00043663 lncRNA upstream 617613 3673709 ~ 3680954 (-) True XLOC_022100
TCONS_00044944 lncRNA upstream 671994 3728090 ~ 3730606 (-) True XLOC_022102
TCONS_00043668 lncRNA upstream 696766 3752862 ~ 3759457 (-) False XLOC_022103
TCONS_00043672 lncRNA upstream 701693 3757789 ~ 3759436 (-) True XLOC_022103
TCONS_00043652 mRNA downstream 154814 2873434 ~ 2901167 (-) False XLOC_022094
TCONS_00043651 mRNA downstream 154814 2873434 ~ 2901167 (-) False XLOC_022094
TCONS_00043650 mRNA downstream 175628 2872855 ~ 2880353 (-) False XLOC_022094
TCONS_00043653 mRNA downstream 175790 2876940 ~ 2880191 (-) True XLOC_022094
TCONS_00043649 mRNA downstream 542681 2502181 ~ 2513300 (-) True XLOC_022091
TCONS_00043655 mRNA upstream 349569 3405665 ~ 3409140 (-) False XLOC_022097
TCONS_00043656 mRNA upstream 350969 3407065 ~ 3408777 (-) True XLOC_022097
TCONS_00043657 mRNA upstream 447500 3503596 ~ 3511630 (-) True XLOC_022099
TCONS_00043658 mRNA upstream 597290 3653386 ~ 3681026 (-) False XLOC_022100
TCONS_00043659 mRNA upstream 599030 3655126 ~ 3674443 (-) False XLOC_022100
TCONS_00043637 other downstream 1837480 1218382 ~ 1218501 (-) True XLOC_022077
TCONS_00043618 other downstream 2434895 618553 ~ 621086 (-) True XLOC_022061
TCONS_00043611 other downstream 2566784 481027 ~ 489197 (-) True XLOC_022056
TCONS_00043689 other upstream 1860809 4916905 ~ 4925625 (-) False XLOC_022113
TCONS_00043690 other upstream 1860859 4916955 ~ 4925623 (-) False XLOC_022113
TCONS_00043705 other upstream 2154925 5211021 ~ 5365184 (-) False XLOC_022119
TCONS_00043706 other upstream 2244183 5300279 ~ 5365345 (-) True XLOC_022119
TCONS_00043707 other upstream 2375100 5431196 ~ 5431319 (-) True XLOC_022120