RNA id: TCONS_00043668


Basic Information

Item Value
RNA id TCONS_00043668
length 847
lncRNA type sense_over
GC content 0.49
exon number 4
gene id XLOC_022103
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 3751451 ~ 3759692 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GACGGCGATTGTTGTCTTTCATTCATTCGCAGCTCGCGGACCTCGCTGGTGTGCACACTTTGGACTTTGTCCCGACCGCTCCTTTAAAAGGCAGGAGGCCAGTGGATCTCCTACACCGAAGAGACCCAGAGGAAGACCAAAGGGCAGCAAAAACAAGCCGAGCTCTACTGTGTCTCGGGGCAAAAAAGCAGCAGCGGCTTCGGCACCTGCAGGGACTAAACGCCGAGGACGACCCAAGAAAGCAGAGAAGGAGGAGCAGCCATCCAAGTCCTccgaggaggaagaagaggaggaagaggaacaGTAACTAGCGACTCGTGCTACCTCACAATCCAACGTTATTTCTTCCTGTTGACCAGAGCTGGACTGACCCTTTCCCCCACCCTGATTTCTCCCCTCTACCCTCTCTCTTTTCCCGTACACTAGTGCCACCCTCACCCTCCAATTCACCTTTATGCTCTAGTGCCCCCTAGTGTCAGGGAGGCTGGCATGTCCATGCGGCTTCTGTGTAACACCactggaaaaaacaaaaaaaggactCAAAATATACTGTATGTCCATTCATGGATGCATGCACacatgtatgcgtgtatgtaaATGTCTCGCACTCAAAGGGTAATTGGTCTATCATCATACTGGACAAAGATATGCTCTGACGGCGGCTTGACACAAAGCGATTTGCAAAATACTgaagtttcttttgtttttctcgTCTCACAAACAGTTTCAGGCCTTGGGGATTCACGTTTATTTTTGCAAGTCTAAATCTAAAATTGCGGTAGGTTGTGTGAAATTCATGTCGTCGTGTACTGGACAAAGGTGAATTGACctacttgtttgtttttac

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043484 regulation of RNA splicing biological_process
GO:0006284 base-excision repair biological_process
GO:0000785 chromatin cellular_component
GO:0005634 nucleus cellular_component
GO:0003906 DNA-(apurinic or apyrimidinic site) endonuclease activity molecular_function
GO:0003677 DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044944 lncRNA downstream 22256 3728090 ~ 3730606 (-) True XLOC_022102
TCONS_00043663 lncRNA downstream 71908 3673709 ~ 3680954 (-) True XLOC_022100
TCONS_00044943 lncRNA downstream 301483 3450998 ~ 3451379 (-) True XLOC_022098
TCONS_00044942 lncRNA downstream 760755 2960218 ~ 2992107 (-) True XLOC_022095
TCONS_00044941 lncRNA downstream 908608 2842399 ~ 2844254 (-) True XLOC_022093
TCONS_00043691 lncRNA upstream 1157512 4916969 ~ 4925131 (-) False XLOC_022113
TCONS_00043692 lncRNA upstream 1158459 4917916 ~ 4925609 (-) False XLOC_022113
TCONS_00043693 lncRNA upstream 1158941 4918398 ~ 4925131 (-) False XLOC_022113
TCONS_00043704 lncRNA upstream 1360275 5119732 ~ 5126166 (-) True XLOC_022117
TCONS_00044713 lncRNA upstream 1431320 5190777 ~ 5199754 (-) True XLOC_022118
TCONS_00043664 mRNA downstream 31418 3710946 ~ 3721444 (-) True XLOC_022101
TCONS_00043662 mRNA downstream 49293 3664387 ~ 3703569 (-) False XLOC_022100
TCONS_00043660 mRNA downstream 71831 3662068 ~ 3681031 (-) False XLOC_022100
TCONS_00043661 mRNA downstream 78412 3662114 ~ 3674450 (-) False XLOC_022100
TCONS_00043659 mRNA downstream 78419 3655126 ~ 3674443 (-) False XLOC_022100
TCONS_00043673 mRNA upstream 18198 3777655 ~ 3802071 (-) True XLOC_022104
TCONS_00043674 mRNA upstream 190091 3949548 ~ 4019928 (-) True XLOC_022105
TCONS_00043675 mRNA upstream 327036 4086493 ~ 4091009 (-) True XLOC_022106
TCONS_00043676 mRNA upstream 456739 4216196 ~ 4225606 (-) False XLOC_022107
TCONS_00043677 mRNA upstream 456934 4216391 ~ 4225830 (-) False XLOC_022107
TCONS_00043654 other downstream 696766 3055981 ~ 3056096 (-) True XLOC_022096
TCONS_00043637 other downstream 2534361 1218382 ~ 1218501 (-) True XLOC_022077
TCONS_00043618 other downstream 3131776 618553 ~ 621086 (-) True XLOC_022061
TCONS_00043611 other downstream 3263665 481027 ~ 489197 (-) True XLOC_022056
TCONS_00043689 other upstream 1157448 4916905 ~ 4925625 (-) False XLOC_022113
TCONS_00043690 other upstream 1157498 4916955 ~ 4925623 (-) False XLOC_022113
TCONS_00043705 other upstream 1451564 5211021 ~ 5365184 (-) False XLOC_022119
TCONS_00043706 other upstream 1540822 5300279 ~ 5365345 (-) True XLOC_022119
TCONS_00043707 other upstream 1671739 5431196 ~ 5431319 (-) True XLOC_022120

Expression Profile

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