RNA id: TCONS_00043682


Basic Information

Item Value
RNA id TCONS_00043682
length 928
RNA type mRNA
GC content 0.50
exon number 5
gene id XLOC_022109
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 4699144 ~ 4705253 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCTGTCGCTCAGTGGATTCATGCGCAGTGTCGAAGGGAggagtaaacagcagtgagtcaCAGCTAACAGGCTAGTGTTCAGCTTTAGCACTCAGTGGTTGGCATTCTGAAGTCAAAGTTTGTTGCTTGGTCCCTGCAGAATGGACATGAGTACCAGTGAGTGTTTTGGATGTGGCCGTTCTGGACACTGGATCAAGAACTGCCCTAATGCTGGTCGCGGTCGTGGCAGGGGCCGAGGACGAGGAAAGGATCTGTTCTGTTACCGGTGTGGTGAGCAGGGACACATCGCCAGAGATTGCGAACAGACTGAGGATGCGTGCTACAACTGCCACCGGAGTGGCCATATTTCTAGAGACTGTAAAGAACCCAAAAAGGAGCGAGAGCAGTGTTGTTATAACTGCGGTAAAGCTGGTCATGTGGCACGCGACTGTGACCATGCCAACGAGCAGAAGTGCTACTCCTGTGGGGGCTTTGGGCACATCCAGAAATTATGTGACAAGGTGAAGTGTTACAGGTGTGGTGAAATCGGACATGTGGCGGTGCAGTGCAGCAAGGCCACTGAGGTGAACTGCTACAACTGCGGCAAGACCGGTCATCTGGCGAGAGACTGCAGCATCGAAGCGTCTGCGTAGCTCCTTTTCCTCTGTCACTTCCTCCTTTCCTGATTGATGGTTGTTTCTCTTCTCTGAATCCTCTTCATTGGCCAAAAGCTGGCAAACAGAGGCCTTCCCGGGCCAGTGAGCAGATATGAGTTTGTTTTTCCTTCGTTATAAAGTAAAAGGGGTGGAAAAATATCTTATTgcgtttaaaacaaaaatgttttttttaggtaGAGGTGTATTGTAAGACGCTTTGTTAAAGGACCCCTTTCAATGCCGCTGGTGAAAAGATCCAATACTGGGACATCAAGAGCCACATGGGATGTCTGG

Function

GO:

id name namespace
GO:2000767 positive regulation of cytoplasmic translation biological_process
GO:0051216 cartilage development biological_process
GO:0050727 regulation of inflammatory response biological_process
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0014029 neural crest formation biological_process
GO:0014036 neural crest cell fate specification biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0048703 embryonic viscerocranium morphogenesis biological_process
GO:0060322 head development biological_process
GO:0005737 cytoplasm cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0045182 translation regulator activity molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003682 chromatin binding molecular_function
GO:0003697 single-stranded DNA binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003727 single-stranded RNA binding molecular_function
GO:0003729 mRNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5045 Enables chromatin binding activity and nucleic acid binding activity. Acts upstream of or within several processes, including neural crest cell fate specification; regulation of transcription, DNA-templated; and skeletal system development. Predicted to be active in cytoplasm. Is expressed in several structures, including alar plate midbrain region; digestive system; immature eye; nervous system; and pectoral fin. Human ortholog(s) of this gene implicated in myotonic dystrophy type 2. Orthologous to several human genes including CNBP (CCHC-type zinc finger nucleic acid binding protein).

Ensembl:

ensembl_id ENSDART00000136399

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00043668 lncRNA downstream 940303 3752862 ~ 3759457 (-) False XLOC_022103
TCONS_00043672 lncRNA downstream 940324 3757789 ~ 3759436 (-) True XLOC_022103
TCONS_00044944 lncRNA downstream 969154 3728090 ~ 3730606 (-) True XLOC_022102
TCONS_00043663 lncRNA downstream 1018806 3673709 ~ 3680954 (-) True XLOC_022100
TCONS_00044943 lncRNA downstream 1248381 3450998 ~ 3451379 (-) True XLOC_022098
TCONS_00043691 lncRNA upstream 211716 4916969 ~ 4925131 (-) False XLOC_022113
TCONS_00043692 lncRNA upstream 212663 4917916 ~ 4925609 (-) False XLOC_022113
TCONS_00043693 lncRNA upstream 213145 4918398 ~ 4925131 (-) False XLOC_022113
TCONS_00043704 lncRNA upstream 414479 5119732 ~ 5126166 (-) True XLOC_022117
TCONS_00044713 lncRNA upstream 485524 5190777 ~ 5199754 (-) True XLOC_022118
TCONS_00043680 mRNA downstream 290092 4392156 ~ 4409668 (-) True XLOC_022108
TCONS_00043679 mRNA downstream 295655 4392147 ~ 4404105 (-) False XLOC_022108
TCONS_00043677 mRNA downstream 473930 4216391 ~ 4225830 (-) False XLOC_022107
TCONS_00043676 mRNA downstream 474154 4216196 ~ 4225606 (-) False XLOC_022107
TCONS_00043684 mRNA upstream 46706 4751959 ~ 4775446 (-) True XLOC_022110
TCONS_00043685 mRNA upstream 129194 4834447 ~ 4855122 (-) True XLOC_022111
TCONS_00043686 mRNA upstream 193985 4899238 ~ 4915118 (-) True XLOC_022112
TCONS_00043687 mRNA upstream 210342 4915595 ~ 4925724 (-) False XLOC_022113
TCONS_00043688 mRNA upstream 210713 4915966 ~ 4925641 (-) False XLOC_022113
TCONS_00043654 other downstream 1643664 3055981 ~ 3056096 (-) True XLOC_022096
TCONS_00043637 other downstream 3481259 1218382 ~ 1218501 (-) True XLOC_022077
TCONS_00043618 other downstream 4078674 618553 ~ 621086 (-) True XLOC_022061
TCONS_00043611 other downstream 4210563 481027 ~ 489197 (-) True XLOC_022056
TCONS_00043689 other upstream 211652 4916905 ~ 4925625 (-) False XLOC_022113
TCONS_00043690 other upstream 211702 4916955 ~ 4925623 (-) False XLOC_022113
TCONS_00043705 other upstream 505768 5211021 ~ 5365184 (-) False XLOC_022119
TCONS_00043706 other upstream 595026 5300279 ~ 5365345 (-) True XLOC_022119
TCONS_00043707 other upstream 725943 5431196 ~ 5431319 (-) True XLOC_022120

Expression Profile

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