RNA id: TCONS_00043690


Basic Information

Item Value
RNA id TCONS_00043690
length 827
RNA type nonsense_mediated_decay
GC content 0.47
exon number 11
gene id XLOC_022113
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 4915595 ~ 4925724 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTTTTCTGCGCCCATCGGTTGTCGAGACGGAAGTGTGGTTTAATGCTGTGGCGATGCCCTTGGAGGTGACATGGCCCTTCCCACAATGCCCCCGCCTGGGCTGGAGAATATCCAGCCGAGTGGTCATGGGAATGGTGGGCTCATACAGTTACCTTTGGACCAAGTATTTTAACTCGCTGATGGTGCACAACCAGGACGTCTTGTTGAACCTGGTTGATGAGCGTCCTCAGGACACACCCCTTATCACAGTATGCAATCATCAGTCCTGTATGGATGATCCACACATCTGGGGAGTCCTTAAGTTCCGGCAGTTGTGGAACCTTAACAAGATGAGATGGACACCTACTGCCTCTGATATCTGTTTCACAAGAGAATTTCACTCCAGTTTCTTCAGCAGAGGGAAATGTGTACCTGTTGTTAGAGGTGATGGAGTATATCAGAAAGGAATGGATTTCCTTTTGGAAAGGCTGAATCAAGGGGAATGGATACACATATTTCCGGAGGGTATAGACAGGTAGAGTTAACATGTCTGGAGAGTTCATGAGGATAAAATGGGgaatTGGACGTTTGATTGCAGAATGTTCTCTTCACCCAATAATTTTACCTATGTGGCATATAGGTATGAATGATGTTCTACCAAATGAGACTCCATACATTCCTCGAGTAGGACAGCGGATAACTGTTTTAGTAGGAAAACCGTTCACAGTCAGGCATCTGGTCAATGCACTGCGAGCTGAAAACACGAATCCGACGGAAATGCGGAAAACAGTGACGGACTATATTCAAGACGAATTTCGCAGTTTGAAAGCCCAGGCAGAGGCTCTTC

Function

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0006644 phospholipid metabolic process biological_process
GO:0045823 positive regulation of heart contraction biological_process
GO:0007007 inner mitochondrial membrane organization biological_process
GO:0035965 cardiolipin acyl-chain remodeling biological_process
GO:0001947 heart looping biological_process
GO:0031307 integral component of mitochondrial outer membrane cellular_component
GO:0031966 mitochondrial membrane cellular_component
GO:0016746 transferase activity, transferring acyl groups molecular_function
GO:0047184 1-acylglycerophosphocholine O-acyltransferase activity molecular_function
GO:0008374 O-acyltransferase activity molecular_function

KEGG:

id description
ko00564 Glycerophospholipid metabolism
ko04390 Hippo signaling pathway
ko04392 Hippo signaling pathway - multiple species
ko01004 Lipid biosynthesis proteins

ZFIN:

id description
ZDB-GENE-030131-684 Predicted to enable 1-acylglycerophosphocholine O-acyltransferase activity. Acts upstream of or within heart looping and positive regulation of heart contraction. Predicted to be located in mitochondrion. Predicted to be integral component of mitochondrial outer membrane. Predicted to be active in mitochondrial membrane. Is expressed in several structures, including endoderm; head; liver; ovary; and pericardial region. Used to study Barth syndrome and visceral heterotaxy. Human ortholog(s) of this gene implicated in Barth syndrome and dilated cardiomyopathy. Orthologous to human TAFAZZIN (tafazzin, phospholipid-lysophospholipid transacylase).

Ensembl:

ensembl_id ENSDART00000131302

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00043668 lncRNA downstream 1157498 3752862 ~ 3759457 (-) False XLOC_022103
TCONS_00043672 lncRNA downstream 1157519 3757789 ~ 3759436 (-) True XLOC_022103
TCONS_00044944 lncRNA downstream 1186349 3728090 ~ 3730606 (-) True XLOC_022102
TCONS_00043663 lncRNA downstream 1236001 3673709 ~ 3680954 (-) True XLOC_022100
TCONS_00044943 lncRNA downstream 1465576 3450998 ~ 3451379 (-) True XLOC_022098
TCONS_00043704 lncRNA upstream 194109 5119732 ~ 5126166 (-) True XLOC_022117
TCONS_00044713 lncRNA upstream 265154 5190777 ~ 5199754 (-) True XLOC_022118
TCONS_00044945 lncRNA upstream 1387959 6313582 ~ 6324914 (-) True XLOC_022127
TCONS_00044946 lncRNA upstream 1402608 6328231 ~ 6347320 (-) False XLOC_022128
TCONS_00043720 lncRNA upstream 1474216 6399839 ~ 6403536 (-) False XLOC_022129
TCONS_00043686 mRNA downstream 1837 4899238 ~ 4915118 (-) True XLOC_022112
TCONS_00043685 mRNA downstream 61833 4834447 ~ 4855122 (-) True XLOC_022111
TCONS_00043684 mRNA downstream 141509 4751959 ~ 4775446 (-) True XLOC_022110
TCONS_00043682 mRNA downstream 211702 4699760 ~ 4705253 (-) False XLOC_022109
TCONS_00043695 mRNA upstream 3819 4929442 ~ 4930229 (-) False XLOC_022114
TCONS_00043696 mRNA upstream 3819 4929442 ~ 4933508 (-) False XLOC_022114
TCONS_00043697 mRNA upstream 3819 4929442 ~ 4933567 (-) False XLOC_022114
TCONS_00043699 mRNA upstream 3819 4929442 ~ 4966821 (-) False XLOC_022114
TCONS_00043698 mRNA upstream 3819 4929442 ~ 4966821 (-) False XLOC_022114
TCONS_00043654 other downstream 1860859 3055981 ~ 3056096 (-) True XLOC_022096
TCONS_00043637 other downstream 3698454 1218382 ~ 1218501 (-) True XLOC_022077
TCONS_00043618 other downstream 4295869 618553 ~ 621086 (-) True XLOC_022061
TCONS_00043611 other downstream 4427758 481027 ~ 489197 (-) True XLOC_022056
TCONS_00043705 other upstream 285398 5211021 ~ 5365184 (-) False XLOC_022119
TCONS_00043706 other upstream 374656 5300279 ~ 5365345 (-) True XLOC_022119
TCONS_00043707 other upstream 505573 5431196 ~ 5431319 (-) True XLOC_022120
TCONS_00043708 other upstream 505795 5431418 ~ 5431517 (-) True XLOC_022121
TCONS_00043740 other upstream 2035897 6961520 ~ 6982874 (-) False XLOC_022140

Expression Profile

//