RNA id: TCONS_00043693


Basic Information

Item Value
RNA id TCONS_00043693
length 908
lncRNA type retained_intron
GC content 0.37
exon number 5
gene id XLOC_022113
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 4915595 ~ 4925724 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGTGGTTTAATGCTGTGGCGATGCCCTTGGAGGTGACATGGCCCTTCCCACAATGCCCCCGCCTGGGCTGGAGAATATCCAGCCGAGTGGTCATGGGAATGGTGGGCTCATACAGTTACCTTTGGACCAAGTATTTTAACTCGCTGATGGTGCACAACCAGGACGTCTTGTTGAACCTGGTTGATGAGCGTCCTCAGGACACACCCCTTATCACAGTATGCAATCATCAGTCCTGTATGGATGATCCACACATCTGGGGAGTCCTTAAGTTCCGGCAGTTGTGGAACCTTAACAAGATGAGATGGACACCTACTGCCTCTGATATCTGTTTCACAAGAGAATTTCACTCCAGTTTCTTCAGCAGAGGGAAATGTGTACCTGTTGTTAGAGGTGATGGAGTATATCAGAAAGGAATGGATTTCCTTTTGGAAAGGCTGAATCAAGGGGAATGGATACACATATTTCCGGAGGGTATAGACAGGCAAACTCATGTTTTTTTGGCcttaaaattacatataaataaattatatatatatgataattatatatatatgataaatatatatatatatatatatatatataaatatatatatatacatatgtatatatacatatatacatatatatatatattctccttATAGGTAGAGTTAACATGTCTGGAGAGTTCATGAGGATAAAATGGGGTAAGATGGTTTTGCTCTAATAATAAGATGCTACTTGTTTGCCCTTTTGATAAGGGCAATcaagtaaattttttatttttaatttttttaaggaatTGGACGTTTGATTGCAGAATGTTCTCTTCACCCAATAATTTTACCTATGTGGCATATAGGTAAGTTGTGCAGGCGCTTTTGAATGACATGACATGCAGCTATAATGCATAACTTAATGAATTT

Function

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0006644 phospholipid metabolic process biological_process
GO:0045823 positive regulation of heart contraction biological_process
GO:0007007 inner mitochondrial membrane organization biological_process
GO:0035965 cardiolipin acyl-chain remodeling biological_process
GO:0001947 heart looping biological_process
GO:0031307 integral component of mitochondrial outer membrane cellular_component
GO:0031966 mitochondrial membrane cellular_component
GO:0016746 transferase activity, transferring acyl groups molecular_function
GO:0047184 1-acylglycerophosphocholine O-acyltransferase activity molecular_function
GO:0008374 O-acyltransferase activity molecular_function

KEGG:

id description
ko00564 Glycerophospholipid metabolism
ko04390 Hippo signaling pathway
ko04392 Hippo signaling pathway - multiple species
ko01004 Lipid biosynthesis proteins

ZFIN:

id description
ZDB-GENE-030131-684 Predicted to enable 1-acylglycerophosphocholine O-acyltransferase activity. Acts upstream of or within heart looping and positive regulation of heart contraction. Predicted to be located in mitochondrion. Predicted to be integral component of mitochondrial outer membrane. Predicted to be active in mitochondrial membrane. Is expressed in several structures, including endoderm; head; liver; ovary; and pericardial region. Used to study Barth syndrome and visceral heterotaxy. Human ortholog(s) of this gene implicated in Barth syndrome and dilated cardiomyopathy. Orthologous to human TAFAZZIN (tafazzin, phospholipid-lysophospholipid transacylase).

Ensembl:

ensembl_id ENSDART00000146653

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00043668 lncRNA downstream 1158941 3752862 ~ 3759457 (-) False XLOC_022103
TCONS_00043672 lncRNA downstream 1158962 3757789 ~ 3759436 (-) True XLOC_022103
TCONS_00044944 lncRNA downstream 1187792 3728090 ~ 3730606 (-) True XLOC_022102
TCONS_00043663 lncRNA downstream 1237444 3673709 ~ 3680954 (-) True XLOC_022100
TCONS_00044943 lncRNA downstream 1467019 3450998 ~ 3451379 (-) True XLOC_022098
TCONS_00043704 lncRNA upstream 194601 5119732 ~ 5126166 (-) True XLOC_022117
TCONS_00044713 lncRNA upstream 265646 5190777 ~ 5199754 (-) True XLOC_022118
TCONS_00044945 lncRNA upstream 1388451 6313582 ~ 6324914 (-) True XLOC_022127
TCONS_00044946 lncRNA upstream 1403100 6328231 ~ 6347320 (-) False XLOC_022128
TCONS_00043720 lncRNA upstream 1474708 6399839 ~ 6403536 (-) False XLOC_022129
TCONS_00043686 mRNA downstream 3280 4899238 ~ 4915118 (-) True XLOC_022112
TCONS_00043685 mRNA downstream 63276 4834447 ~ 4855122 (-) True XLOC_022111
TCONS_00043684 mRNA downstream 142952 4751959 ~ 4775446 (-) True XLOC_022110
TCONS_00043682 mRNA downstream 213145 4699760 ~ 4705253 (-) False XLOC_022109
TCONS_00043695 mRNA upstream 4311 4929442 ~ 4930229 (-) False XLOC_022114
TCONS_00043696 mRNA upstream 4311 4929442 ~ 4933508 (-) False XLOC_022114
TCONS_00043697 mRNA upstream 4311 4929442 ~ 4933567 (-) False XLOC_022114
TCONS_00043699 mRNA upstream 4311 4929442 ~ 4966821 (-) False XLOC_022114
TCONS_00043698 mRNA upstream 4311 4929442 ~ 4966821 (-) False XLOC_022114
TCONS_00043654 other downstream 1862302 3055981 ~ 3056096 (-) True XLOC_022096
TCONS_00043637 other downstream 3699897 1218382 ~ 1218501 (-) True XLOC_022077
TCONS_00043618 other downstream 4297312 618553 ~ 621086 (-) True XLOC_022061
TCONS_00043611 other downstream 4429201 481027 ~ 489197 (-) True XLOC_022056
TCONS_00043705 other upstream 285890 5211021 ~ 5365184 (-) False XLOC_022119
TCONS_00043706 other upstream 375148 5300279 ~ 5365345 (-) True XLOC_022119
TCONS_00043707 other upstream 506065 5431196 ~ 5431319 (-) True XLOC_022120
TCONS_00043708 other upstream 506287 5431418 ~ 5431517 (-) True XLOC_022121
TCONS_00043740 other upstream 2036389 6961520 ~ 6982874 (-) False XLOC_022140

Expression Profile

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