RNA id: TCONS_00044713


Basic Information

Item Value
RNA id TCONS_00044713
length 283
lncRNA type inter_gene
GC content 0.55
exon number 2
gene id XLOC_022118
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 5190777 ~ 5199754 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGTACACACACTTCACCAACAGCTGGAACGCTTTGGAGTCCAGTGACCACTCGAGACGCCGGCTCCTCGTTATTCAAGACTTTCTCCATATTGTCTTGGTGAAACGTCGCGCACTGTTCACACGCCTCTGAGCTCCTCTGCGCGTCATCGACAGCTGTTGCACAGGCGCGCGCTTTTGGGCACGTCGCTGCTCATCACATACAGTACACAGATGTGATTCAGTGACTAAATCGGGCCAAAACAGCTGCCGTCGAGATTCCACCAGCACTCGCGGGGCTCACAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00043704 lncRNA downstream 64611 5119732 ~ 5126166 (-) True XLOC_022117
TCONS_00043692 lncRNA downstream 265168 4917916 ~ 4925609 (-) False XLOC_022113
TCONS_00043691 lncRNA downstream 265646 4916969 ~ 4925131 (-) False XLOC_022113
TCONS_00043693 lncRNA downstream 265646 4918398 ~ 4925131 (-) False XLOC_022113
TCONS_00043668 lncRNA downstream 1431320 3752862 ~ 3759457 (-) False XLOC_022103
TCONS_00044945 lncRNA upstream 1113828 6313582 ~ 6324914 (-) True XLOC_022127
TCONS_00044946 lncRNA upstream 1128477 6328231 ~ 6347320 (-) False XLOC_022128
TCONS_00043720 lncRNA upstream 1200085 6399839 ~ 6403536 (-) False XLOC_022129
TCONS_00043721 lncRNA upstream 1203453 6403207 ~ 6410752 (-) False XLOC_022129
TCONS_00044714 lncRNA upstream 1209989 6409743 ~ 6419850 (-) True XLOC_022129
TCONS_00043703 mRNA downstream 88930 5086317 ~ 5101847 (-) True XLOC_022116
TCONS_00043702 mRNA downstream 158190 5009964 ~ 5032587 (-) True XLOC_022115
TCONS_00043700 mRNA downstream 215260 4929442 ~ 4975517 (-) False XLOC_022114
TCONS_00043701 mRNA downstream 215325 4929472 ~ 4975452 (-) True XLOC_022114
TCONS_00043698 mRNA downstream 223956 4929442 ~ 4966821 (-) False XLOC_022114
TCONS_00043709 mRNA upstream 453470 5653224 ~ 5685172 (-) False XLOC_022122
TCONS_00043711 mRNA upstream 453619 5653373 ~ 5683147 (-) False XLOC_022122
TCONS_00043710 mRNA upstream 453619 5653373 ~ 5683147 (-) False XLOC_022122
TCONS_00043712 mRNA upstream 462334 5662088 ~ 5685023 (-) True XLOC_022122
TCONS_00043713 mRNA upstream 488218 5687972 ~ 5719453 (-) True XLOC_022123
TCONS_00043689 other downstream 265152 4916905 ~ 4925625 (-) False XLOC_022113
TCONS_00043690 other downstream 265154 4916955 ~ 4925623 (-) False XLOC_022113
TCONS_00043654 other downstream 2134681 3055981 ~ 3056096 (-) True XLOC_022096
TCONS_00043637 other downstream 3972276 1218382 ~ 1218501 (-) True XLOC_022077
TCONS_00043618 other downstream 4569691 618553 ~ 621086 (-) True XLOC_022061
TCONS_00043705 other upstream 11267 5211021 ~ 5365184 (-) False XLOC_022119
TCONS_00043706 other upstream 100525 5300279 ~ 5365345 (-) True XLOC_022119
TCONS_00043707 other upstream 231442 5431196 ~ 5431319 (-) True XLOC_022120
TCONS_00043708 other upstream 231664 5431418 ~ 5431517 (-) True XLOC_022121
TCONS_00043740 other upstream 1761766 6961520 ~ 6982874 (-) False XLOC_022140

Expression Profile

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