RNA id: TCONS_00043735


Basic Information

Item Value
RNA id TCONS_00043735
length 2128
RNA type mRNA
GC content 0.43
exon number 6
gene id XLOC_022138
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 6872473 ~ 6879731 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAACAAGATTTTTTTCTGAATAGAATTTGTGGAGTTCCCTCATATAGTCATTGAAACCATCTTTTTAAAAGCGTAACGTGAATACTGCCGAAGCACTCGAACAGCTAATATGGATTCACTCTCTGTAAAGGAAATTTCTTGTCCAATATGCTGTGAAATCTTCAAGTCGCCAATTCTTCTGTCATGCAGTCACAGTTTCTGCAAAGAGTGTATTCAACAGTTCTGGAGAACCAAGATTTCTCGGGAATGTCCCGTGTGCAGGAGAAGATCCTCAAAAGACGATCCTCCGAGTAATCTCGTGTTAAAAAACCTGTGCGAGTTGTTCGAGAGGGGCAGAAGTCATGAGAGCTGTTCTTCATCCGGGACCGAGGAATTCTGCGGTTTACATAATGAGAGACTCAAACTCTTCTGTCTGGAGGATAAACAGCCTGCGTGTTTAGTGTGCAGAGATTCAGAGAAGCACGTCAGGCACACATTCAGACCCATCTGTGAAGTCATTTCATCATGTAAGgtgGAGTTGGGCTTTTTACAAGAGAAGCTTAAACACAGAAAGAAGATTAAAGTACAATGTGAAAAAACACTTCAACACATCAAGTCTCAGGCCGAGCACACAGAGTGCCAGATTAAATTAAAGTTCGAGAAGCTTCATCAGTTTCTCCGAGATGAAGAGGAAATTGCAATGACTTCACTGAGAGAAGAAAAGGAGCAGAAGAACCAGAGGATGAAGGAGAAGCTTGAGGAGATAAACGAACACATCTCAGCTCTTTCACACACTATCAGAGACATGGAGGAGATGATGAATGCCAATGAAGTCTTGTTTCTAAAGAATTTTTCAGTCACAATGGAAAGGGTTCAGAGTTCACTGTCTGATCCACAAATGACTCCTGGATCTTTGATTCATGTGGCGCGACACTTGGGCAACCTGCCATTCAGAGTCTGGAAGAAGATGCAAGACATTGTTCACAACACTCCTGTGAtcctggatccaaacacagctcATCCAGATCTCCTCTTGTCTGATGATCTGACCAGTCTGAGATGCAGCACTGAAAGTGGAGATCTTCCCGATAATCCAGAGAGGTTTGATGAGCATTCGTGTGTTCTGGGCTCTGAGGGCTTTAACTCAGGAACACACTGCTGGGATGTGGAGGTGAAGGAGAGCTCGTCCTGGGGTCTGGGAGTGACTACTGCCTCAAACCAGAGAAAGGGTTGTGATTTCTTTGACTCGGGTGTGTGGAGTGTGCAGTACAGACTGTTTGAAGAGTCTGGTTTTCCAGTTGGGCAGAAGCTGGAGCGGGTGAGGGTACAGCTGGACTATGACAAAGGAAGGGTGTCATTCTCTGACCCTGTAactaacacacatatacacacattcacaaccaCCTTCACCGAGACAGTCTTTCCATTCTTATACAGCTTTACTTATCTCTGGATCTTACCCAATTCcttgtaaaaaataatacctaTGAACAGTAGTGTGTTTACTGTAGATCCTGCCATAAACCGCTGTTCATAATTACCTattatgctttgcatgtatgcatTAATAGGATGCTCCAAACTTGATTCGTATATAGTCACGCTTGGACAGCTTTGAattgatagttttaatctattctTCTTGCTTTTAacgtctttgaactaatactgctgtTGACCAGCACCACATTCTGGAGTATCACTATCTCTAaagtcagggccggagtgggactcaatttaagccctggagtttcaagacagaccggcccacctcagttcacgactgattccaattcagtttctaatgacactatcacgtctttttcaagaaaacagctgctttagaaattcaactgtccaacagccctaacagtattatatcttaaagggccatgaaaccccctcgtttcagcagggtgttttcacacctctactttcgaaaaagtcagaaaagtgggcgtgtccagctctgtttaggggggagtgtcggaggaactaaagtgggatggtgtgggagtgtctatttgtgcacgcgcgagtttcagagtcaaaatacacacccacacagacaggagaaagcgatggtgtttaacctacatggacatctgtagtcgaattatttgctgaattaataaatgttggactttaa

Function

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080219-13 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination. Predicted to be active in cytoplasm.

Ensembl:

ensembl_id ENSDART00000082154

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00043734 lncRNA downstream 6511 6856469 ~ 6865962 (-) True XLOC_022137
TCONS_00043728 lncRNA downstream 185287 6680809 ~ 6687186 (-) False XLOC_022133
TCONS_00044714 lncRNA downstream 452623 6409743 ~ 6419850 (-) True XLOC_022129
TCONS_00043721 lncRNA downstream 461721 6403207 ~ 6410752 (-) False XLOC_022129
TCONS_00043720 lncRNA downstream 468937 6399839 ~ 6403536 (-) False XLOC_022129
TCONS_00043742 lncRNA upstream 104941 6984672 ~ 6997683 (-) True XLOC_022141
TCONS_00044947 lncRNA upstream 291135 7170866 ~ 7217483 (-) False XLOC_022144
TCONS_00043746 lncRNA upstream 291135 7170866 ~ 7217488 (-) False XLOC_022144
TCONS_00044948 lncRNA upstream 291135 7170866 ~ 7217574 (-) False XLOC_022144
TCONS_00044949 lncRNA upstream 320512 7200243 ~ 7202861 (-) True XLOC_022145
TCONS_00043733 mRNA downstream 6527 6856469 ~ 6865946 (-) False XLOC_022137
TCONS_00043732 mRNA downstream 20177 6845635 ~ 6852296 (-) True XLOC_022136
TCONS_00043731 mRNA downstream 106820 6754910 ~ 6765653 (-) True XLOC_022135
TCONS_00043730 mRNA downstream 122653 6736116 ~ 6749820 (-) True XLOC_022134
TCONS_00043727 mRNA downstream 150372 6673446 ~ 6722101 (-) False XLOC_022133
TCONS_00043736 mRNA upstream 2679 6882410 ~ 6920107 (-) False XLOC_022139
TCONS_00043737 mRNA upstream 2878 6882609 ~ 6920107 (-) True XLOC_022139
TCONS_00043738 mRNA upstream 69210 6948941 ~ 6982986 (-) False XLOC_022140
TCONS_00043739 mRNA upstream 71204 6950935 ~ 6982966 (-) False XLOC_022140
TCONS_00043743 mRNA upstream 118902 6998633 ~ 7052412 (-) False XLOC_022142
TCONS_00043708 other downstream 1440956 5431418 ~ 5431517 (-) True XLOC_022121
TCONS_00043707 other downstream 1441154 5431196 ~ 5431319 (-) True XLOC_022120
TCONS_00043706 other downstream 1507128 5300279 ~ 5365345 (-) True XLOC_022119
TCONS_00043705 other downstream 1507289 5211021 ~ 5365184 (-) False XLOC_022119
TCONS_00043690 other downstream 1946850 4916955 ~ 4925623 (-) False XLOC_022113
TCONS_00043740 other upstream 81789 6961520 ~ 6982874 (-) False XLOC_022140
TCONS_00043741 other upstream 86601 6966332 ~ 6982916 (-) True XLOC_022140
TCONS_00043747 other upstream 292389 7172120 ~ 7172203 (-) True XLOC_022144
TCONS_00043748 other upstream 330426 7210157 ~ 7210262 (-) True XLOC_022146
TCONS_00043749 other upstream 701455 7581186 ~ 7581302 (-) True XLOC_022149

Expression Profile

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