RNA id: TCONS_00043755


Basic Information

Item Value
RNA id TCONS_00043755
length 3351
RNA type mRNA
GC content 0.51
exon number 18
gene id XLOC_022153
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 7762033 ~ 7826849 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGCAATTATTTTGTGGCTGTAGATTTATTTTTCTGCACCTGATTGTCTCTCTTTCTGCAGTTCCCTCTGAGATTGTTGGACAGGAGCTGAGTGCTCTGAGTTGCCCATTGGCCAGGAAAAGGCGTCTACAGGAAGCGGAGTCAGAGCAACCCTCATCCAAGAGGAAGTCTCATCCGCTGAAGCTGGCCATGGATGAAGGGTTCAACGCAGAGAGTGAAGGAAGCGGAGAGGAGACTGAGTTgagggaggaagaggaggaggaggatgaagaatGTACACAGCAGAAGCTTGGAGATCAAGAGGACGAGCAGCAAGCGAAGCAGAACACAGAGAGCACCAATACAGAAGAAGAGGGTGATGAGGAGGAGTGTATCATCATTGAGTCATCCAGCACAGAAAAACCCAAGCCTTCACCCTCAGAGGACCTCTCCAGCTATCAGCACATAGTGGCCAACTCAATGACACACCTCAACAACCACAACAATGGTGCCATGTCACCCCAACAACCGCCTGTCATCATggaaacacaagaaaaaagtccTTTTAGGGAAACAGAAGAAGAGAAATATGGAACAGAGGAAACAAGGAGCCAAGTAGGAGTTGTGGTTTGTAAAGAGAACGGATTGAAGCTGGAAGATGAAGAAGCGGACAGTGAGAGCCAGAAAGAGTCAGACCACCAGTACTTCACTGAGGAGATGCAGACACAACAggatgatgaagaagaagaagaagatgatgatgatgatgaggggTTGAGGTCTGAGATACAAAAAGGGGAGACGTACCACAATGAGTTGAATGATATTAAGcatgaagaagaggaagaagaggagagAGAAACCGTCTGTTCGGTTATCACTGCCACTCAGGGATCCCACATAAGGGAAGATTATATTTCCCACAAACTCGCATTACCACAAAGCTACAGCTCCAATAAGGCCCCCACAGCATCAGCTATGCTTATTGATGTCCAGTCTGAGGGGTCGGAGAGGGacgctgatgatgatgatgatgatgatgatgatgatgatgatgatgatggtgatgaggGGGATGACGACAGCTTGTCTCAACGATCAACGGTGGCAGACGAGTCCGAGATGTTCGACATCATGCGGGGGAACCTAGGGTTGCTGGAGCAGGCCATTGCTTTGAAAGCTCAACAGGTCAAAGCTCACCGCGGGCTCAGTCGCATTCCTGAACACCACCGTTTCTTTGCTCTCGATGACCGGGCCGGCAAACATATGGAACATATCCGTAAGAGCTGCTTCGTAAAAGAGAGTTCTAGATCAGAGAAGCGAGAGATCAAATGCCCAACCCCTGGGTGTGATGGAACGGGTCACGTGACCGGACTCTATCCCCACCACCGCAGTCTGTCAGGCTGCCCACACAAAGATCGGATCCCTCCTGAGATTTTGGCCATGCATGAAAATGTCCTGAAGTGCCCAACGCCGGGATGCACTGGTCAGGGTCATGTCAACAGCAACCGCAACACACACCGCAGTTTGTCCGGATGTCCCATCGCTGCTGCTGAAAAGCTCTCAAAGAGTCATGACAAGCAACATCTGCCCCAGCCCATGGGCGAGCACATCAAGGGCAGCCCAAACTCTGACCGTGTACTCAGGCCCATGTGTTTTGTGAAGCAGTTGGAGATTCCGCCGCACGGCAGCTACAGGCCCAGCCTCGTCCCCGCCACGCCACGTGCTAATCTGGCCAAGGAGCTGGAGAAGTACTCCAAGGTGTCCTTCGATTATGCAAGCTTCGACGTGCAGGTGTTCGGCAAGCGCATGCTCGCCCCAAAGATGCACACCAGCGAAACTTCACCCAAAGCCTTCAAATCCAAACCTCCATTCCCCAGGGTCTCCCCCCCAAGTCCCAGCCTGCACGGTGTTTATGGAAAAAGCTCCTCCAGTGGCTATGATTATTCCCATGATGCTGAAGCTGCCCACATGGCTGCCACTGCTATCCTCAACCTGTCCACACGCTGCTGGGAGAGACCAGAAAACCTTAGCATCAGACACCAAGATAAGAGTATGGAAATTGAGGTTGATGAGAACGGCACTTTGGACTTAAGCATGAAGAAGCCCATAAAGAGGGAAGTGGGAATGTCATGCACCAGCCCTGAAGTGCGTTCCCCCGATCTGTCCTCATCATCTTCGTCATCATCCACATCTCTTCACCATGGCAACAGCAGCATCTCGCCTCATTCTTTGCACACCTATAAACAAGAGGAGTGGGAGGGGCCTCTGGACTACACTAAACCCAATCGGCAGAGAGAGGAGGAGCTAGAAGAGATGGACCACAGTGCTCCGTCTTTTGCCTCCTCTGACCCTGAAGACTGCGACATGATGCAAGATGGCCTGGAGGACAGGAAGTACCCTGGAGAGGTCACAACCCCCAGCTTTAAGGTCAGGTTCCAGCCCAAGGACAACAAAAAAGACCTCCTGATGTGTCCCACTCCGGGCTGTGACGGTAGCGGACACATTACCGGAAACTATGCATCCCATCGCAGCCTGTCTGGGTGTCCGCTTGCTGATAAGAGTCTTCGGTCCCTCATGGCAGCACACACAGCTGAACTCAAATGTCCAACTCCAGGATGTGATGGTTCAGGTCATATCACTGGCAACTACTCGTCTCACAGAAGATGCCCAGTGCCAGGTTGTGACAGCCTGGGCCACATCAGTGGGAAGTATGCCACTCACCGCAGTGCATATGGATGCCCGCTGGCTGCCAGGCGGCAGAAGGAAGGGTTGTTGAATGGCTCTCCATTCTCTTGGAAGGCGTTTAAGACAGAAGGCCCCACCTGTCCCACACCAGGATGTGATGGATCGGGACACGCCAACGGCAGCTTCCTCACCCATCGCAGTCTCTCCGGCTGCCCCAGAGCCTCCCTCAACAAGAAGAAAGCCAAGTTCCCTGGAGAAGAGTATCTCAGCACTAAGTTCAGAGCCAGCGACGTGTTGGACAACGATGAAGATATCAAGCAACTCAACAAAGAAATAAATGAGCTCAATGAATCCAACAATGAGATGGAGGCTGATATGGTGAATCTTCAAACACAGATCACATCCATGGAGAAGAACCTGAAGAACATAGAGCAGGAGAATAAGATGATTGAAGAACAGAATGAGGCATTGTTTATGGAGCTTTCTGGACTCAGTCAAGCTCTAATACGAAGCCTGGCCAACATCCGCCTGCCTCACATGCAGGAGCCAATCACCGAGCAGAATTTCGAGAGCTACGTGAGCACCCTGACTGACATGTACACCAATAAGGACTGCTACCAGAACCCAGAGAACAAGGCCCTTCTGGAGACCATCAACAAGGCGGTAAAAGGTATCAAGGTCTGA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0003322 pancreatic A cell development biological_process
GO:0005634 nucleus cellular_component
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090313-67 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within pancreatic A cell development. Predicted to be active in nucleus. Is expressed in brain; central nervous system; ovary; and posterior pancreatic bud. Orthologous to human MYT1 (myelin transcription factor 1).

Ensembl:

ensembl_id ENSDART00000190946

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044952 lncRNA downstream 26641 7733139 ~ 7735392 (-) True XLOC_022151
TCONS_00044951 lncRNA downstream 333440 7419810 ~ 7428593 (-) True XLOC_022148
TCONS_00044950 lncRNA downstream 438154 7309563 ~ 7323879 (-) True XLOC_022147
TCONS_00044948 lncRNA downstream 544459 7170866 ~ 7217574 (-) False XLOC_022144
TCONS_00043760 lncRNA upstream 150901 7950085 ~ 7971776 (-) True XLOC_022155
TCONS_00044715 lncRNA upstream 219591 8018775 ~ 8124492 (-) False XLOC_022156
TCONS_00044953 lncRNA upstream 219985 8019169 ~ 8155055 (-) True XLOC_022156
TCONS_00044954 lncRNA upstream 464375 8263559 ~ 8281746 (-) False XLOC_022157
TCONS_00044955 lncRNA upstream 465687 8264871 ~ 8267563 (-) False XLOC_022157
TCONS_00043753 mRNA downstream 6660 7743481 ~ 7755373 (-) True XLOC_022152
TCONS_00043752 mRNA downstream 87131 7592247 ~ 7674902 (-) False XLOC_022150
TCONS_00043751 mRNA downstream 87131 7592247 ~ 7674902 (-) True XLOC_022150
TCONS_00043750 mRNA downstream 167310 7592009 ~ 7594723 (-) False XLOC_022150
TCONS_00043745 mRNA downstream 636539 7067196 ~ 7125494 (-) True XLOC_022143
TCONS_00043761 mRNA upstream 482123 8281307 ~ 8373807 (-) False XLOC_022157
TCONS_00043762 mRNA upstream 485608 8284792 ~ 8373676 (-) True XLOC_022157
TCONS_00043763 mRNA upstream 919766 8718950 ~ 8733092 (-) True XLOC_022158
TCONS_00043766 mRNA upstream 1601241 9400425 ~ 9492055 (-) False XLOC_022163
TCONS_00043767 mRNA upstream 1602414 9401598 ~ 9492266 (-) False XLOC_022163
TCONS_00043749 other downstream 180731 7581186 ~ 7581302 (-) True XLOC_022149
TCONS_00043748 other downstream 551771 7210157 ~ 7210262 (-) True XLOC_022146
TCONS_00043747 other downstream 589830 7172120 ~ 7172203 (-) True XLOC_022144
TCONS_00043741 other downstream 779117 6966332 ~ 6982916 (-) True XLOC_022140
TCONS_00043740 other downstream 779159 6961520 ~ 6982874 (-) False XLOC_022140
TCONS_00043759 other upstream 112925 7912109 ~ 7912223 (-) True XLOC_022154
TCONS_00043764 other upstream 1517394 9316578 ~ 9316694 (-) True XLOC_022161
TCONS_00043765 other upstream 1555638 9354822 ~ 9354931 (-) True XLOC_022162
TCONS_00043776 other upstream 2053712 9852896 ~ 9853010 (-) True XLOC_022167
TCONS_00043794 other upstream 2864758 10663942 ~ 10681453 (-) False XLOC_022175

Expression Profile

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