RNA id: TCONS_00043778


Basic Information

Item Value
RNA id TCONS_00043778
length 1389
RNA type mRNA
GC content 0.48
exon number 13
gene id XLOC_022168
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 9908940 ~ 9925568 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTCAGCACTACATGCAGAAACCACAGCAACTCAAGCTCCAAAACCAGTCTTTTTGTTGATGTCGACGTAATGTCGCAGCCAACTGTTTCCTCAGAATATCCCTCAACCCTGAGAAGGAGAGAGGGAGGGGGGTGTAGAGCAGACCCCATCATAAAGCCAGGAGGAGCATCTACTGCAGAGTTAGAAAGAAACCCTGAAAACCAACACAATCTGCTCCTAAAATCTCATGTAGTAATGGACTCTAAGCTGAAATCAATCAGACATTATGAACATCTTGAACCTGATCTTGCAGAGGAATTTGAAGATCCAAGAGATTACTGCTATGGTGGATATCACCCAGTCCAGGTTGGAGACATCTTTAATAAGAGATACAAGGTTTTATCAAAGCTGGGTTGGGGTTATTTCTCTACAGTATGGCTGTGCGTTGACCTCAGGTCCGGCAGGCATGTGGCAGTAAAAGTGTTGAAGAGCGGAGCTGGATTCACTCAGGCTGGCCAAGATGAACTCACATTACTGCGATGTGCCAGTGGTCCCACAGCCCGTAACCCACTTAAAGGACGTATAGTACAGTTACTGGATGAGTTTAAGTTAGCTGGTGTAAACGGGATCCATATTTGTTTGGTGTTGGAGCTGCTGGGGCCAGACCTGCGTTGTTGGCAGATGTGTTTCGGTAATCCAGGTCTGTCTCTCTCCTGTGTCAAACACGTCATCACTCAGGTACTTGAGGGTCTGGAGTATCTGCACAGCCACTGTAAGATCATTCACACAGACATCAAGCCTGAGAACATACTGCTGTGTTTCACACCTCATCCACCAGGAGGAGATATACACACATATTCCTCTTCAGCCATTAGAAACACAGTACTCAAGGCTCCTGGAGAATCGGGAAAACTTGGAACTTGGGGAAACTTGGAAGATATCACAGTGAAGATTGCAGATCTTGGCAGCTCATGTTGGGTGAGATCCAGACCAGACAGTATCGCTCTCTGGAGGTCCTGCTGGGCTCTGAATACGGTCCTGCAGCTGACATCTGGAGTGTGGCCTGCTTGGGCATTTGAGCTTGCAACGGGCGATTCCTTATTTGAGCCCAAAGCAGGACCTAATTTCTCATTAGAGGAAGACCACCTGGCTCACATCATTGAGCTCCTGGGAAAGATCCCAGTCTCTGTGGCTCAGTGTGGAAAATATTACTACGAGTATTTCAACCGCAAGGGTGACCTGCGGCGAATCGCTGTTCTTCGTCCATGGGGACTGTATGAAGTGCTGGTGGAGAAATATCACTTTCTCCTCAGAGAGGCATCACTTTTCTCTGATTTCCTGTTGCAGATGTTGAACTACCTGCCAGAGCGGAGAGCCACAGCAGCTCAGTGTCTTAAACATCCCTGGCTG

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0050684 regulation of mRNA processing biological_process
GO:0006468 protein phosphorylation biological_process
GO:0010468 regulation of gene expression biological_process
GO:0000245 spliceosomal complex assembly biological_process
GO:0016310 phosphorylation biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function
GO:0004707 MAP kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090312-151 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in intracellular signal transduction; regulation of mRNA processing; and spliceosomal complex assembly. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in cytoplasm and nucleus.

Ensembl:

ensembl_id ENSDART00000081268

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00043769 lncRNA downstream 101410 9794730 ~ 9807539 (-) False XLOC_022165
TCONS_00044958 lncRNA downstream 486600 9415480 ~ 9422349 (-) True XLOC_022163
TCONS_00044957 lncRNA downstream 1072611 8835967 ~ 8836338 (-) True XLOC_022160
TCONS_00044956 lncRNA downstream 1108194 8799037 ~ 8800755 (-) True XLOC_022159
TCONS_00044955 lncRNA downstream 1641386 8264871 ~ 8267563 (-) False XLOC_022157
TCONS_00043788 lncRNA upstream 324639 10250207 ~ 10251099 (-) False XLOC_022171
TCONS_00043789 lncRNA upstream 325652 10251220 ~ 10252276 (-) True XLOC_022171
TCONS_00044959 lncRNA upstream 366600 10292168 ~ 10394443 (-) False XLOC_022172
TCONS_00044960 lncRNA upstream 389802 10315370 ~ 10317412 (-) False XLOC_022172
TCONS_00044961 lncRNA upstream 389802 10315370 ~ 10394444 (-) True XLOC_022172
TCONS_00043774 mRNA downstream 44783 9809637 ~ 9864166 (-) False XLOC_022166
TCONS_00043775 mRNA downstream 44783 9810339 ~ 9864166 (-) True XLOC_022166
TCONS_00043772 mRNA downstream 48960 9809540 ~ 9859989 (-) False XLOC_022166
TCONS_00043773 mRNA downstream 53322 9809637 ~ 9855627 (-) False XLOC_022166
TCONS_00043771 mRNA downstream 101403 9800722 ~ 9807546 (-) True XLOC_022165
TCONS_00043779 mRNA upstream 12668 9938236 ~ 9965148 (-) False XLOC_022169
TCONS_00043780 mRNA upstream 23696 9949264 ~ 10048533 (-) False XLOC_022169
TCONS_00043781 mRNA upstream 48012 9973580 ~ 9991060 (-) False XLOC_022169
TCONS_00043782 mRNA upstream 70092 9995660 ~ 10017245 (-) False XLOC_022169
TCONS_00043783 mRNA upstream 117405 10042973 ~ 10137322 (-) True XLOC_022169
TCONS_00043776 other downstream 55939 9852896 ~ 9853010 (-) True XLOC_022167
TCONS_00043765 other downstream 554018 9354822 ~ 9354931 (-) True XLOC_022162
TCONS_00043764 other downstream 592255 9316578 ~ 9316694 (-) True XLOC_022161
TCONS_00043759 other downstream 1996726 7912109 ~ 7912223 (-) True XLOC_022154
TCONS_00043758 other downstream 2085164 7799093 ~ 7823785 (-) True XLOC_022153
TCONS_00043794 other upstream 738374 10663942 ~ 10681453 (-) False XLOC_022175
TCONS_00043804 other upstream 1606772 11532340 ~ 11532470 (-) True XLOC_022182
TCONS_00043805 other upstream 1661849 11587417 ~ 11587532 (-) True XLOC_022183
TCONS_00043813 other upstream 2142552 12068120 ~ 12068234 (-) True XLOC_022187
TCONS_00043831 other upstream 3710225 13635793 ~ 13635907 (-) True XLOC_022200

Expression Profile

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