RNA id: TCONS_00043797


Basic Information

Item Value
RNA id TCONS_00043797
length 866
RNA type mRNA
GC content 0.46
exon number 6
gene id XLOC_022176
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 10724042 ~ 10745319 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ttgttgttgttgtgtcggTGACGCGGCAAGTCCTGCCGGCCGAACGGCAAATCAGTCAGCATCAATAATCTGTCAATTTTTGCATGTGGAGATTAGTATAGATCTCCCAGCAACACACTTGCATATCGATTAGCTTCAATAAAGCAAAAAATGGCGGTTCCTGCAGCCCCAAACCTGCAGCTGAACACGGCGAGACAAAGCAGCCCAGTCAACTCTACGGAAAACGACATCCACATCGACGAGAGAGAGCTGGAAAACATCACCAACCATGTCGAGGATGGCACCTCATTGCCGCTGCACTCGCCCTGGACCTTCTGGCTCGATCGgtCATTACCAGGTACAACGGCAGCAGAGTGTGAATCAAATCTGAAAAAGATATATACTGTCCACACTGTACAGAGTTTTTGGAGTGTGTACAACAACATCCCTCCTGTGTCCTGCCTCCCCCTGAGGTGTAGCTACCACTTAATGCGAGGAGAAAGAAGGCCACTATGGGAGGAGGAAAGCAATGCAAAGGGAGGTGTTTggaaaatgaaagtgccaaagGAGAGCACATTAGCTGTGTGGAAAGAACTGCTGTTGGCTACGATTGGTGAACAGTTCACAGATTATTGTGCATCAGAGGATGAAGTGGTTGGAGTAAGTGTCAGTGTGAGAGAGCGAGAAGATGTGGTTCAGGTCTGGAATGGAAACGCCTCTTTTGCCAATGAGGCAAACGTTTTAGGAAGAATCTACGAACTTCTTCCACAGATATCTTTTAAAGCAGTATTTTATAAACGTAAGGGGTTTACATTTTACTCACAGCATGTCACACTCTCTGCTTAAGTGTATATGGTAATGAAATATTAAAGTATATGAAACCCTAA

Function

GO:

id name namespace
GO:0006412 translation biological_process
GO:0006413 translational initiation biological_process
GO:0006417 regulation of translation biological_process
GO:0005845 mRNA cap binding complex cellular_component
GO:0016281 eukaryotic translation initiation factor 4F complex cellular_component
GO:0000340 RNA 7-methylguanosine cap binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040912-156 Predicted to enable RNA 7-methylguanosine cap binding activity and translation initiation factor activity. Predicted to act upstream of or within regulation of translation and translational initiation. Predicted to be part of eukaryotic translation initiation factor 4F complex and mRNA cap binding activity complex. Orthologous to human EIF4E3 (eukaryotic translation initiation factor 4E family member 3).

Ensembl:

ensembl_id ENSDART00000140745

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044963 lncRNA downstream 95978 10628152 ~ 10631424 (-) True XLOC_022174
TCONS_00044962 lncRNA downstream 99330 10625357 ~ 10628072 (-) True XLOC_022173
TCONS_00044961 lncRNA downstream 332958 10315370 ~ 10394444 (-) True XLOC_022172
TCONS_00044959 lncRNA downstream 332959 10292168 ~ 10394443 (-) False XLOC_022172
TCONS_00044964 lncRNA upstream 249501 10994789 ~ 10997256 (-) True XLOC_022179
TCONS_00043803 lncRNA upstream 597316 11342604 ~ 11345773 (-) True XLOC_022181
TCONS_00043811 lncRNA upstream 1158519 11903807 ~ 12014872 (-) True XLOC_022184
TCONS_00044716 lncRNA upstream 1271415 12016703 ~ 12019292 (-) False XLOC_022185
TCONS_00044965 lncRNA upstream 1272429 12017717 ~ 12020611 (-) False XLOC_022185
TCONS_00043790 mRNA downstream 4393 10634837 ~ 10723009 (-) False XLOC_022175
TCONS_00043791 mRNA downstream 4702 10638009 ~ 10722700 (-) False XLOC_022175
TCONS_00043792 mRNA downstream 4702 10647641 ~ 10722700 (-) False XLOC_022175
TCONS_00043795 mRNA downstream 4738 10669331 ~ 10722664 (-) True XLOC_022175
TCONS_00043793 mRNA downstream 30776 10647680 ~ 10696626 (-) False XLOC_022175
TCONS_00043798 mRNA upstream 17396 10762684 ~ 10786400 (-) True XLOC_022177
TCONS_00043799 mRNA upstream 83428 10828716 ~ 10914275 (-) False XLOC_022178
TCONS_00043800 mRNA upstream 86270 10831558 ~ 10831995 (-) True XLOC_022178
TCONS_00043801 mRNA upstream 269405 11014693 ~ 11128601 (-) False XLOC_022180
TCONS_00043802 mRNA upstream 290859 11036147 ~ 11130683 (-) True XLOC_022180
TCONS_00043794 other downstream 45949 10663942 ~ 10681453 (-) False XLOC_022175
TCONS_00043776 other downstream 874392 9852896 ~ 9853010 (-) True XLOC_022167
TCONS_00043765 other downstream 1372471 9354822 ~ 9354931 (-) True XLOC_022162
TCONS_00043764 other downstream 1410708 9316578 ~ 9316694 (-) True XLOC_022161
TCONS_00043759 other downstream 2815179 7912109 ~ 7912223 (-) True XLOC_022154
TCONS_00043804 other upstream 787052 11532340 ~ 11532470 (-) True XLOC_022182
TCONS_00043805 other upstream 842129 11587417 ~ 11587532 (-) True XLOC_022183
TCONS_00043813 other upstream 1322832 12068120 ~ 12068234 (-) True XLOC_022187
TCONS_00043831 other upstream 2890505 13635793 ~ 13635907 (-) True XLOC_022200
TCONS_00043832 other upstream 2969098 13714386 ~ 13714500 (-) True XLOC_022201

Expression Profile

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