RNA id: TCONS_00043844


Basic Information

Item Value
RNA id TCONS_00043844
length 2175
lncRNA type lincRNA
GC content 0.38
exon number 6
gene id XLOC_022210
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 14407888 ~ 14415213 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GACAGAGTCCGCTTTCACTGAAGCACATTGTCAAAGAAGCGctgtctttttaaataaactgccgattcgagtttaaaacaactacattctcgcctgaaataCTCTTAAAACTACATTTTGTGACACATTagatgatatttttttaaatttgcggGTCTTCAAAGCGGGGATTGTCCATTGACTTTCGCTTAGCATTAGCAGGCAGCCAGCAGATTTGAATTCGTGTTGTCCAATAGGATTTTGCCCGCGCCGTGCATTCATAATGCGAGCTGATTACGTGCGACGGTTAATCTCCAGCTGTTGCACTGTTTTGACGCTCTTCTCGCCGCCGATGGAGGATGGACCTGAAGGACTCAAAGAAGCTGGAATAACGTTACGCTCGTGAAGACGAAGCACAGACATTTGCAGaaaatgaaGTGGACGAGGAAGCAGTAGTGTAATAACGTGATTCCTGCAATTGGTGAGGATGCATCATCTTTTGAGGGTAATGCGAATGTCCTGCGTATCCAGTGAAATAAGtcaTGGTGAACCTGACTGAATGCATTCATCAACCATCTCCAACCAAGTCAGAGCTTCAAGGGCAGCTTGTGCTAAAGGTGCCTGAGCTTGATTAAGAAAAAAAGCATCTCCACTGGCCAAAGTCTACAAAAAAGCAGGAGAATAGAAGTTTGCAGATGATCTAACAGgtggtgcagtgggttgcacgatcgcctcacatcaagaaggttgctggttcgtgactcggctgggtcagttggcatttctgtgtggagtttgcatgttctccccatgttgacgtgggtttcctccaggtgctccagtttcctccacaagtccaagtccaacaagtccaaagacgtgctacaggtgaattggtgggatgatgatgatgctccCTACCCACCTCTACAGATGGTTGAAAGTCCTTTGCAAAGTGTTGGAGAATAGGAGTTTAAAGGCATTATTACATCCTTCGCCGTTTACTGTGTTTTCAACTTGGCTTATCCACGctacataaagaatgcaaaggATGAACATCAGCAACTCCCCGAGATGGAGCAACAATTTAAATTTGAACATCAGCAACGGTGTGAAGATGGAGATCCAAAATTACAAGAAAAACAACTCAGTGCAGCTGTCCGAGAGAACTGGTATTGCTGGGTCTGCATCAAACAGCAATGCTTGGATCTTTGCATTTACTTTTTTGCATGCGTTTCGAGTCTGCATCAGTATTTTAAGACTAGCAGCTAtagacattttaataacattgCCCAAATCAACTGAGAAGCACAAGATGACACAATGCTAAGAATTTTTTCCGCCCAACATCCTTGATGAGATTGACACATTCAGGTGTTCAAATTGAACTGTTTTTGTGAGCATGTGAGACTGCTAATGGAGAAGAAATGACTCTTTcctaatgaaatacattttaaatgtcaatactGCACTGGTTTCTGTGTGGCAAGTTTATAATACTGCTGTTGAATGATTCATATTTCCATGCAAATACACTAGGAGTTGACTTTGAATGGGGTGGTATAAACCAAGACAGACGGACTTTCAGGCTCTTGAAACATACTCTGCTGATAAActgtttaagaatgtttagaaattttaaatcaaatgtgTAATACTGTTTgatcaaatgtgtttttgagatctaaaatgaTTAAGGGTATACAGTAAGTGACATGTTTCAATTTACTGTATGGAAAAAGACTGCTTTGAGATTCTTGATGCTTTTAGAAAAATGTAGAATGCAGTGCACTAACAAAAATATACTTCATGAGGTCTAGTGCTGTTTTAGAAAGATTACTTTGTTACATTGGTAAAAATGCTCAGTGAAATGGGATGCActgatgttaaaaaataatattaagcttttttggtgtttcataaaatgttttaatgtttaagcagctatttttttaagtttatgcatCTGGTAGGACATTGTGATTAAAACTTTCATCCTCCAAAAAGGtgacaatgtaattttttttaatctttcaatgagtgtttgtgtaaaaatgttacaAGTATAAGTACAATTATTGTGCAGTTTGTACTCATggaaaaatattgctttttattattttaaaattatgtaatgtttaaacattcatcctgtaaaaatgttgatatttaatgtttaataaatgataaatgaaa

Function

GO:

id name namespace
GO:0001704 formation of primary germ layer biological_process
GO:0048729 tissue morphogenesis biological_process
GO:0043011 myeloid dendritic cell differentiation biological_process
GO:0036342 post-anal tail morphogenesis biological_process
GO:0001773 myeloid dendritic cell activation biological_process
GO:0060974 cell migration involved in heart formation biological_process
GO:0060975 cardioblast migration to the midline involved in heart field formation biological_process
GO:0007369 gastrulation biological_process
GO:0003260 cardioblast migration biological_process
GO:0003318 cell migration to the midline involved in heart development biological_process
GO:0097028 dendritic cell differentiation biological_process

KEGG: NA

Ensembl:

ensembl_id ENSDART00000136012

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044971 lncRNA downstream 583696 13818507 ~ 13824192 (-) True XLOC_022203
TCONS_00044970 lncRNA downstream 598291 13806359 ~ 13809597 (-) True XLOC_022202
TCONS_00044969 lncRNA downstream 782303 13623519 ~ 13625585 (-) True XLOC_022199
TCONS_00044968 lncRNA downstream 842279 13561718 ~ 13565609 (-) True XLOC_022198
TCONS_00043830 lncRNA downstream 842537 13561718 ~ 13565351 (-) False XLOC_022198
TCONS_00044972 lncRNA upstream 159285 14574498 ~ 14583539 (-) True XLOC_022211
TCONS_00044973 lncRNA upstream 320122 14735335 ~ 14738386 (-) True XLOC_022212
TCONS_00043849 lncRNA upstream 404194 14819407 ~ 14825434 (-) False XLOC_022214
TCONS_00043852 lncRNA upstream 417919 14833132 ~ 14846838 (-) False XLOC_022214
TCONS_00043853 lncRNA upstream 417919 14833132 ~ 14847345 (-) False XLOC_022214
TCONS_00043843 mRNA downstream 3949 14265122 ~ 14403939 (-) True XLOC_022209
TCONS_00043842 mRNA downstream 191382 14193547 ~ 14216506 (-) True XLOC_022208
TCONS_00043839 mRNA downstream 348803 13940958 ~ 14059085 (-) False XLOC_022206
TCONS_00043840 mRNA downstream 350697 13941218 ~ 14057191 (-) True XLOC_022206
TCONS_00043836 mRNA downstream 529990 13844920 ~ 13877898 (-) False XLOC_022205
TCONS_00043845 mRNA upstream 327874 14743087 ~ 14769523 (-) False XLOC_022213
TCONS_00043846 mRNA upstream 328242 14743455 ~ 14766902 (-) True XLOC_022213
TCONS_00043847 mRNA upstream 393008 14808221 ~ 14830627 (-) False XLOC_022214
TCONS_00043848 mRNA upstream 393013 14808226 ~ 14825450 (-) False XLOC_022214
TCONS_00043850 mRNA upstream 414255 14829468 ~ 14918276 (-) False XLOC_022214
TCONS_00043841 other downstream 418406 13989364 ~ 13989482 (-) True XLOC_022207
TCONS_00043838 other downstream 533288 13861420 ~ 13874600 (-) True XLOC_022205
TCONS_00043837 other downstream 550371 13854969 ~ 13857517 (-) False XLOC_022205
TCONS_00043832 other downstream 693388 13714386 ~ 13714500 (-) True XLOC_022201
TCONS_00043831 other downstream 771981 13635793 ~ 13635907 (-) True XLOC_022200
TCONS_00043855 other upstream 418450 14833663 ~ 14858602 (-) False XLOC_022214
TCONS_00043860 other upstream 586146 15001359 ~ 15014574 (-) True XLOC_022215
TCONS_00043863 other upstream 692635 15107848 ~ 15107962 (-) True XLOC_022217
TCONS_00043872 other upstream 1530941 15946154 ~ 15951976 (-) True XLOC_022224
TCONS_00043875 other upstream 2146020 16561233 ~ 16562161 (-) True XLOC_022227

Expression Profile

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