RNA id: TCONS_00043923


Basic Information

Item Value
RNA id TCONS_00043923
length 4555
RNA type mRNA
GC content 0.43
exon number 13
gene id XLOC_022250
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 17847040 ~ 17866100 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAAGATGTCTATGTCCCATTTGTATGGGCGTAGgggtgatgaggaggaggaggatggtgTGGAGATTGAGAAGTTTGAGGTGTCGGAGTGGGACTTGGCCAATGAGTTCAATCCGGACAGACGCAGATACAGACAGACTAAAGAAGAAGCAACTTATGGGATTTGGGCAGAGCAGGACTCTGATGATGAACGGCCCAGCTTTGGAGGAAAAAGAGCGAAAGACTATTCCACTCCCGTGAGCTTTGTGAGTGCTGGCCTGCGAAAGACTGCAGCTGAGGAAAAAGCAGAGCGGGAGGGTTCAGATGATTCTGATGCTGAAGAGGCACCTCCTCCACCCCGAGCTGCTGCTCCCAAAAAGCTCCAAACGGGTGGGAGCTTTAAGACATCTCAGAGGTTTGCAGGTGGCATCAGAACGGGGCAGGACTTGGGAAACTGGGAGAAACACACACGAGGCATTGGTCAAAAGCTCCTGCAGAAGATGGGTTACGTTCCTGGAAAAGGATTGGGAAAGAATGCTCAGGGTATTGTGAATCCTATTGAAGCCAAGTTGCGGAAAGGGAAAGGAGCGGTTGGTGCATATGGCAGTGAGAGGACCCAGCAGTCACTGCAGGATTTCCCTGTTGTCGAttctgaggaggaggaggaggaaGAATTTCAGAAGGAGTTGGGGCAATGGCGTAAAGAACCTGGAACTGCAAAGAAAAAGCCTAAATATTCTTACAGGACTGTGGACGATCTGAAAGCACATGGTACACGGGCCAACATGAGCATGAGCAGACCTGCTGGAGAACTGGCTCAGGTCAAGGTGATCGACATGACCGGCAGAGAGCAGAAGGTGTATAACAGTTACAGTCATATGAGTCAGAAGCACAGTGTTCCTGAGGAGGCTCCTTTGAGCGTGAGCACAAGAGAGCAGAAGAGCTCTGGCTTCGCACTTCCAGAGCTCGAACACAACCTCAAACTGCTCATTGAGCTCACGGAGCAAGACATCCTGCAGAGTGCTCGACTTCTCCAGCATGAAAAAGACACAGTAGTGACTCTGACCCATGAGAGCGACGCCCTGCAGGTGCGGCTGGCAGAGGAGGAGGAGACTCTTGGTCGGCTGGAGCAGGTGATGAGTCTGGTTGAGCGTTTTGAAGCAGGCGATAAAGAGGGAGACCCTGCACTCAGCCTTCAGGAGTGCGCTAAGATCTTCGAGCAGCTGCAGACTGAGTTCTACCAGGAGTATAAGACTATGGGTTTGGGAGATTTAGCTGTGTCTGTTGTGCATCCTCTGTTGAAAGAAAAACTTCGCAATTGGGATCCACTTAAgGACTGTTCAGATGGTTTGGAGGAAGTCGGTCAATGGAGGGCCATTCTTGAAAGCACGCTTTCTCTTCACAGTGGCCCAGACACATCTAACATGGACCCCTATCACAGGTTGATATGGGAAGTGTGGGTTCCAGTCATGAGGACCTGTGTTTCTCAATGGCAGCCTAGAAATGTGGGCCCTATGGTGGACTGTGTGGAGTGCTGGGCTCCTGTATTACCGCTGTGGATTCTGGATCATGTTTTAGAGCAGCTTATTTTTCCAAGACTACAGAGAGAGgtggACAACTGGAACCCACTGACCGACACAGTGCCCATTCATTCATGGATTCATCCCTGGCTACCTCTTATGCAAACCCGTCTTGAGCCGCTGTATGCACCCATCCGTAGTAAACTAGCCCATGCTCTGCAGCGCTGGCACCCCAGCGATTCCTCCGCCAGACTCATTCTGCAACCCTGGAGAGATGTCTTCACACCCGGCGCCTGGGAGGCCTTCATGGTCAAAAATATTGTCCCCAAACTGGCTTTGTGTTTAGGAGAGCTAGTGGTCAATCCTCATCAGCAGTTGCTCGATCCATTTAACTGGGTGATGGACTGGGAATGTATGCTCTCTGTCTCTTCCATGGTCGGACTCCTGGATAAAAATTTCTTCCCCAAATGGCTACAGGTGTTGTGCTCTTGGCTCAGTAATAACCCAAACTATGAGGAGATCACTAAATGGTATCTGGGCTGGAAGGGCTTGCTCTCAGAGAACCTGCTCAGTCACCCATTAGTCAAAGAAAAACTCAACGAAGCCCTCGACATCATGAACCGTGCCGTTGCTTCTGGACTCGGGGGTTATATGCAACCTGGAGCAAGAGAGAACATTGCATACCTGATTCAGACAGAGAGAAGGAAGGATTTCCAATGCGAGCTTCAGCCAGAGCGGCGCGAAGTGGACAATTCTGCCACACGGCCACCAGGAATGGCAGCGGTGCCAGCATCTGTACCGACCAACTTTAAAGATCTAGTACAGGCCAAGGCCGAAGAGAACGGCATCGTCTTTATGCCACTGGTAGCCAAACGGCACATGGGCAAACAGCTATTCACATTTGGCAGAATAGTCATCTACATCGAGCGTGGAGTGGTGTTTGTCCAAGGTGAGAAAACCTGGGTTCCAACATCACTACAGAGTCTTATTGACATGGCCAAATGAGGCGGAGGTTTGAATATTGCTCTCTAATCTAGTTCTGTGTTGCTTTAAACTGTTTGTCTATCAATATTGTTTATACTGCTGAATAAACTTGTGCTTTAATTAATGGTTGATCGTTTCATTCAGCTACCGCCTACTGATGTGTCACATTTCATTTTAATCAGACTAATATAGgaagagatttttattttatacaaatttttattgtgtatttctGTTTAATAAGCTGGTGGAAAAAATAGTGAAAACTAAATCTGATTTACAATTGAAAAAGGAAATATTTCTATTAGAAAAGTAAAGGAGCAGttattacagaaaaataaatggCATTGTTTCATACATCATTTGATCCCTCAAGATATGGTTCAGAGAAGTAAAGTGTCCATCTCTTCAGAAGCAGATGGGCTGTTGTTATTGATGTCACAGCTCTTCTGCCTTAAAAATCCTTCTGAAGATCTGCAAAAATCAAATACAACAATTACATTGTGCAGCCAGTCATTATTTTGAACTATGGCCAATTACAAATTTCTGGActttattttatgaataaaaaaagaccCTAAAGACAAACCAAATCATttaggtcacaggtgtcaaactcagttccaaaagggccgcagctctgcacagtttagttccaaccctaattaaacacacctgatcaaactaattgagtccttcaggcttgtttgaaacctacaggtaagtgtgttggagcagggttggaacctaactgtgcagggctgcggccctccatgaattgagtttgacacccctgatttatgTGATGCTGCATGTACCACTTGTAAAGTATGAACACTTTTTTGATTTTTGCTACAGATTACATTAAATCAGATTTGAAACACATTATGACATTAgctagcattttgctaaataaatgcactttattacacatttattatatttatatgagtGATTTTTGGAATAATTTTAATTGTCCAAATTGTTATTTTGCAAATGTTAATATTTcactaacaaattaaaataaaacaatatatattaaaacagtcTTAAAGTGATGTCTTAAAGGTTTTTGTACCACAGTTTATTTTCATTACCTAAAATTTGTGTTTAGGTCAAATCTGTTATAAGTTAATAAGTTAAATGAATggacgtattattattattattcattattcactcattcattcattttcttttcggcttagtccctttattaatccggggtcgccacagcggaacgaaccaccaacttccagcatgttttatgcagcggatgccctcccagccgcaacccatctctgggaaacatccacacacacactcattcacactcatacactacggacaattaatcttactcaattcacctttaccgaaactggagcatccagaggaaatgcacacgaacgcaggaagaacatgcaaactccacacaaaaacactaaccgacccagccgaggctcgaaccagcaacctttttgctgtgttacaacactaactactgcgccacggcgtcgccattattattattatatttttaaagttcaCATTTAATTAAGCCAGCAAAGTGTATTCTAAAAAAATAGCTTTTGAACTTGTATTCTGGTGCATCACTATTGATAATTGACATCCAGCATCACTAATCCATTTGTAAAGCCTTCAATTAAGTTTTAATTGCACAGCGAGACAAATTTTGCAAGCAATTATCAGTGACGTTTAACACCGTGACTAGGGCCAGGCAGAATCTCCagacatttttagctatttctgcagagaattttgtacaAAATCTGTGGATTCATGTGAAATGATTTTAGGAGAATCACAACTAAAAACTTAACATGAAATCAACCAATAATACATTTCTAACGTTTattatgcaaatccaattagatataacttatttggtaaacaaagcaagtctctcatatatctattaaaagacagaaaatattactttacaaactattgtaaataaatcatatgaacattttaatattatatcacaataatattagtgaaattaattaaaaaactaaataaatataaattcacacatttaCGCAATAC

Function

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0000390 spliceosomal complex disassembly biological_process
GO:0008380 RNA splicing biological_process
GO:0005634 nucleus cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0071008 U2-type post-mRNA release spliceosomal complex cellular_component
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
ko03041 Spliceosome

ZFIN:

id description
ZDB-GENE-040718-479 Predicted to enable nucleic acid binding activity. Predicted to be involved in spliceosomal complex disassembly. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in nucleus. Predicted to be part of U2-type post-mRNA release spliceosomal complex. Orthologous to human TFIP11 (tuftelin interacting protein 11).

Ensembl:

ensembl_id ENSDART00000178248

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00043920 lncRNA downstream 7842 17657994 ~ 17839198 (-) False XLOC_022247
TCONS_00044980 lncRNA downstream 7891 17684914 ~ 17839149 (-) True XLOC_022247
TCONS_00044725 lncRNA downstream 7919 17684914 ~ 17839121 (-) False XLOC_022247
TCONS_00043919 lncRNA downstream 183938 17657994 ~ 17663102 (-) False XLOC_022247
TCONS_00043914 lncRNA downstream 396309 17446923 ~ 17450731 (-) True XLOC_022243
TCONS_00044981 lncRNA upstream 21404 17881023 ~ 17885851 (-) True XLOC_022251
TCONS_00043926 lncRNA upstream 157581 18017200 ~ 18017871 (-) True XLOC_022252
TCONS_00043938 lncRNA upstream 178455 18038074 ~ 18057912 (-) True XLOC_022254
TCONS_00044726 lncRNA upstream 214096 18073715 ~ 18074419 (-) True XLOC_022256
TCONS_00043941 lncRNA upstream 260235 18119854 ~ 18122655 (-) True XLOC_022257
TCONS_00043922 mRNA downstream 26285 17782972 ~ 17820755 (-) True XLOC_022249
TCONS_00043918 mRNA downstream 189692 17655790 ~ 17657348 (-) True XLOC_022246
TCONS_00043917 mRNA downstream 337384 17477400 ~ 17509656 (-) True XLOC_022245
TCONS_00043916 mRNA downstream 362485 17472702 ~ 17484555 (-) False XLOC_022245
TCONS_00043915 mRNA downstream 376894 17454691 ~ 17470146 (-) True XLOC_022244
TCONS_00043925 mRNA upstream 134172 17993791 ~ 18017946 (-) False XLOC_022252
TCONS_00043927 mRNA upstream 161309 18020928 ~ 18030399 (-) False XLOC_022253
TCONS_00043928 mRNA upstream 161475 18021094 ~ 18024543 (-) True XLOC_022253
TCONS_00043929 mRNA upstream 172950 18032569 ~ 18057561 (-) False XLOC_022254
TCONS_00043930 mRNA upstream 173380 18032999 ~ 18057957 (-) False XLOC_022254
TCONS_00043921 other downstream 164108 17682818 ~ 17682932 (-) True XLOC_022248
TCONS_00043901 other downstream 670822 17176104 ~ 17176218 (-) True XLOC_022240
TCONS_00043900 other downstream 800656 17044294 ~ 17046384 (-) True XLOC_022239
TCONS_00043898 other downstream 862446 16983777 ~ 16984594 (-) True XLOC_022237
TCONS_00043893 other downstream 868125 16977930 ~ 16978915 (-) False XLOC_022237
TCONS_00043939 other upstream 203554 18063173 ~ 18063299 (-) True XLOC_022255
TCONS_00043945 other upstream 522837 18382456 ~ 18382551 (-) True XLOC_022260
TCONS_00043958 other upstream 750397 18610016 ~ 18611010 (-) True XLOC_022266
TCONS_00043959 other upstream 751508 18611127 ~ 18612421 (-) True XLOC_022267
TCONS_00043965 other upstream 899923 18759542 ~ 18777957 (-) True XLOC_022270

Expression Profile

//