RNA id: TCONS_00044726


Basic Information

Item Value
RNA id TCONS_00044726
length 590
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id XLOC_022256
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 18073715 ~ 18074419 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAGCTTTACAGACAATCCATTTCAAACTAGATGCAACAAGGCTGTTTTCCCTTCGCTCCCCTCCTCTCTTAGTAGGGAAGCGTTGCATGTCTTGGGAAGAGCCGGTGAATAGTAATGAACTAagcttgtgtgtgtatttgacagAGCAGAAGAAGGGGGAACGAGGTGGGggctgtgcagtgtgtgtgtgtgttgcagagaGAGATGTGAGAATAAGGGATGCAGAGGAGAATGGAGACTGCCTTCCCATTCCTCCACTCTTCCCCTCTCACTTCTGCTTCTCCCTGTCAGAGAGAAAGGAGTTCAGAAGAAATACTACTGATTCTTATTTTTTCGGGTGAAGATATGCTGGATTTCTGTGAAAATAGACATTTAAGAGATGCTGAATTGAGGAGTGAAGGAAAAGATAGACTGAATTCAGCTCAAAGCAGGAAAGCACCTGCAAGAAGACCCTCACTGCGCTGTGTTCTTCTGCCCACCTAAGGGGGCACTAGAAAGGGAGAGACTATGGAAGAAAACATAAAATTAGgtaagaaatgttttttattatcaattttgcaataattttatttactatattgCGTATAGTT

Function

GO:

id name namespace
GO:0043005 neuron projection cellular_component
GO:0097458 obsolete neuron part cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00043938 lncRNA downstream 15803 18038074 ~ 18057912 (-) True XLOC_022254
TCONS_00043926 lncRNA downstream 55844 18017200 ~ 18017871 (-) True XLOC_022252
TCONS_00044981 lncRNA downstream 187864 17881023 ~ 17885851 (-) True XLOC_022251
TCONS_00043920 lncRNA downstream 234517 17657994 ~ 17839198 (-) False XLOC_022247
TCONS_00043941 lncRNA upstream 45435 18119854 ~ 18122655 (-) True XLOC_022257
TCONS_00044982 lncRNA upstream 307878 18382297 ~ 18385167 (-) False XLOC_022260
TCONS_00044983 lncRNA upstream 307878 18382297 ~ 18385168 (-) False XLOC_022260
TCONS_00044984 lncRNA upstream 312368 18386787 ~ 18392290 (-) False XLOC_022261
TCONS_00043951 lncRNA upstream 497240 18571659 ~ 18572645 (-) True XLOC_022263
TCONS_00043933 mRNA downstream 15757 18033219 ~ 18057958 (-) False XLOC_022254
TCONS_00043930 mRNA downstream 15758 18032999 ~ 18057957 (-) False XLOC_022254
TCONS_00043932 mRNA downstream 15789 18033121 ~ 18057926 (-) False XLOC_022254
TCONS_00043936 mRNA downstream 15803 18035578 ~ 18057912 (-) False XLOC_022254
TCONS_00043931 mRNA downstream 15808 18033080 ~ 18057907 (-) False XLOC_022254
TCONS_00043940 mRNA upstream 44116 18118535 ~ 18130264 (-) False XLOC_022257
TCONS_00043942 mRNA upstream 102862 18177281 ~ 18286822 (-) False XLOC_022258
TCONS_00043943 mRNA upstream 106480 18180899 ~ 18287618 (-) True XLOC_022258
TCONS_00043944 mRNA upstream 297629 18372048 ~ 18381361 (-) True XLOC_022259
TCONS_00043946 mRNA upstream 312570 18386989 ~ 18415872 (-) True XLOC_022261
TCONS_00043939 other downstream 10416 18063173 ~ 18063299 (-) True XLOC_022255
TCONS_00043921 other downstream 390783 17682818 ~ 17682932 (-) True XLOC_022248
TCONS_00043901 other downstream 897497 17176104 ~ 17176218 (-) True XLOC_022240
TCONS_00043900 other downstream 1027331 17044294 ~ 17046384 (-) True XLOC_022239
TCONS_00043898 other downstream 1089121 16983777 ~ 16984594 (-) True XLOC_022237
TCONS_00043945 other upstream 308037 18382456 ~ 18382551 (-) True XLOC_022260
TCONS_00043958 other upstream 535597 18610016 ~ 18611010 (-) True XLOC_022266
TCONS_00043959 other upstream 536708 18611127 ~ 18612421 (-) True XLOC_022267
TCONS_00043965 other upstream 685123 18759542 ~ 18777957 (-) True XLOC_022270
TCONS_00043968 other upstream 794997 18869416 ~ 18870756 (-) False XLOC_022272

Expression Profile

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