RNA id: TCONS_00043941


Basic Information

Item Value
RNA id TCONS_00043941
length 363
lncRNA type retained_intron
GC content 0.47
exon number 2
gene id XLOC_022257
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 18118535 ~ 18130264 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGATGACAGTGACGTTTACACCGGGGGTATGAAGAGAATTATGTTAGAGCTGAAATGTTTCGAGAAAACATGGACATTTGCAAGCTGATGTTTATGTTTCCTTTTGTCTTCTATCAGAAGACTCGGGCAGTGATGAAGATTTCATGgtggaggatgatgatgatgacagtgATTATGGCCGACCCAAACGGAGGAACTCAAAAGTGAGCAGAAGAAGCAAAGACAAGAAATCCCCCAAACCCAAGATAAGGGCTTCAGCGACCCGAGGGGCCAAGAAAAGGAGAGGGAAGCGTCAGACGAGGGTGAAGAGAGTGGTGAAGAAGGCCTCACCAAAATCTGAAGATGAAGAGAGCAACAAGGAGg

Function

GO:

id name namespace
GO:0036297 interstrand cross-link repair biological_process
GO:0000724 double-strand break repair via homologous recombination biological_process
GO:0005737 cytoplasm cellular_component
GO:0003690 double-stranded DNA binding molecular_function
GO:0003697 single-stranded DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-4544 Predicted to enable double-stranded DNA binding activity and single-stranded DNA binding activity. Predicted to be involved in double-strand break repair via homologous recombination and interstrand cross-link repair. Predicted to be active in cytoplasm. Orthologous to human NUCKS1 (nuclear casein kinase and cyclin dependent kinase substrate 1).

Ensembl:

ensembl_id ENSDART00000124821

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044726 lncRNA downstream 45435 18073715 ~ 18074419 (-) True XLOC_022256
TCONS_00043938 lncRNA downstream 61942 18038074 ~ 18057912 (-) True XLOC_022254
TCONS_00043926 lncRNA downstream 101983 18017200 ~ 18017871 (-) True XLOC_022252
TCONS_00044981 lncRNA downstream 234003 17881023 ~ 17885851 (-) True XLOC_022251
TCONS_00044980 lncRNA downstream 280705 17684914 ~ 17839149 (-) True XLOC_022247
TCONS_00044982 lncRNA upstream 259642 18382297 ~ 18385167 (-) False XLOC_022260
TCONS_00044983 lncRNA upstream 259642 18382297 ~ 18385168 (-) False XLOC_022260
TCONS_00044984 lncRNA upstream 264132 18386787 ~ 18392290 (-) False XLOC_022261
TCONS_00043951 lncRNA upstream 449004 18571659 ~ 18572645 (-) True XLOC_022263
TCONS_00043952 lncRNA upstream 451566 18574221 ~ 18578522 (-) False XLOC_022264
TCONS_00043933 mRNA downstream 61896 18033219 ~ 18057958 (-) False XLOC_022254
TCONS_00043930 mRNA downstream 61897 18032999 ~ 18057957 (-) False XLOC_022254
TCONS_00043932 mRNA downstream 61928 18033121 ~ 18057926 (-) False XLOC_022254
TCONS_00043936 mRNA downstream 61942 18035578 ~ 18057912 (-) False XLOC_022254
TCONS_00043931 mRNA downstream 61947 18033080 ~ 18057907 (-) False XLOC_022254
TCONS_00043942 mRNA upstream 54626 18177281 ~ 18286822 (-) False XLOC_022258
TCONS_00043943 mRNA upstream 58244 18180899 ~ 18287618 (-) True XLOC_022258
TCONS_00043944 mRNA upstream 249393 18372048 ~ 18381361 (-) True XLOC_022259
TCONS_00043946 mRNA upstream 264334 18386989 ~ 18415872 (-) True XLOC_022261
TCONS_00043947 mRNA upstream 435554 18558209 ~ 18567088 (-) False XLOC_022262
TCONS_00043939 other downstream 56555 18063173 ~ 18063299 (-) True XLOC_022255
TCONS_00043921 other downstream 436922 17682818 ~ 17682932 (-) True XLOC_022248
TCONS_00043901 other downstream 943636 17176104 ~ 17176218 (-) True XLOC_022240
TCONS_00043900 other downstream 1073470 17044294 ~ 17046384 (-) True XLOC_022239
TCONS_00043898 other downstream 1135260 16983777 ~ 16984594 (-) True XLOC_022237
TCONS_00043945 other upstream 259801 18382456 ~ 18382551 (-) True XLOC_022260
TCONS_00043958 other upstream 487361 18610016 ~ 18611010 (-) True XLOC_022266
TCONS_00043959 other upstream 488472 18611127 ~ 18612421 (-) True XLOC_022267
TCONS_00043965 other upstream 636887 18759542 ~ 18777957 (-) True XLOC_022270
TCONS_00043968 other upstream 746761 18869416 ~ 18870756 (-) False XLOC_022272

Expression Profile

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