RNA id: XM_021565604.2


Basic Information

Item Value
RNA id XM_021565604.2
length 3431
RNA type mRNA
GC content 0.55
exon number 8
gene id ttc34
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 31950519 ~ 31958002 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTGGCTTAGACATTTAGCTAGACCTGGCAACCCTGGCTGTGTCTGTTGGTTATAACAGAAGGCGATCGTACGACTTTATGGGCAGAAAGAAAAAAGAACAGAAACAGACAAAGCATGGCTGAACAGACAGATGCTAATCATCTCAAATGCTAGCAGTGAGAAAGAAGCAAGCAGCCCACGCAAATACTTTCCAGATCTCAATGGCAAAATACGCCTTATCTACATCAAAAACAGGGCAATCGGAAATGAGAAACCTTACACATTTGAAAGGACGACGGAGGCGTTCAAATCAATGGATTAAATCTTTGTACAGCAGCTCCTCAACCTCATCTATGCTGGAAATGTGCAGCAGTCTGAGCGTTTGGTTTCCATAGTAACCACGGAAACACGCTGCCACGAACAAAAGGGGGGCGAGCCACGGAGACAAGCCGGGACCTTGGTGAGGCTTTTGGAGTCCACCCTGCCACAGCACGACTGCAGTTCCAGAGGCTCTTCGTGGACCAGGGGACAGGAGCGGCAGCCCGCATGCAACTGCGTcagcaggcagagagaggactgttggggtacagggagacagtcctggTCCGTCTTGACCTGCGTTCCTCTGAGGGCGTGGAGCTGCTGGACCCAGTGATCGCCCAGCTCTGGGCGCTGTGCCACCTGGAGCCCGACGGGGGCAGCAGAGAGTTGCGGGTGCGGCTGGCCGAGTGCCTCCTCCTGCGGGGCGAGTTCCGAGAGGCCCTCTCCATCTGCAGCCAGCTGGCGACCCACACCAACTCCCACGCCCAGCATAGCtaccagaacacactgcaggtgCTGCGCGGCTACTCCCGTCTTCTCTCAGATGACCACAAGGGGGCTCTGGAGGACTTTCAAATGGTGATCGAGCACAAGGCACCCCACCCTTCCAGCTGTGTGCGGGCGCTGTGCGGCAGGGGCGTCCTGCGTATGATGGGGGGCCTGCACTACCTCACAGCCCTGGACTATGTGACGGCGAGCAGGTTGCAGCCCCAGGACACTGCGCTGACTGTACGCTGCTTGGTTCCCTGGAACTGCCGCGGGCTGCTGCTCACCGTGCTGTTGGAGCAGGCCAGGGTCATGCTGGAGGAGTGGACCGTAGATCACAGCTCCAGTCTCAGTCCCTTGGAACAGCAAGAGCACCAGCAGACCAAACAGCTACAGCCTACGCAGACAAAAGATGGCTACAAAGAAGGGACACCAGTTGGAGTCCACTCTCTGGCTGTTTTGCTGATGGAGTTACAGCCCAGTGCTGACGCTCCTCAGATCCTGGTGGCTGATGCCCTGTACCTGCTGGGCCGGGTGGAGGAAGCGTATCGCTTGCTGTTGGCCATTGGGCCCACTAGCCCACGTGCACCCATCCTGGCCCGCCTCACCCTGCTACAACTGCACCGGGGCTTCCTTTATGATGCCAACCAGCTGCTGAAGAAGTTGATCCAGTGTGGTGATACGAGCTGCTTGCGCCCCCTGCTGGCCGTGGCGTCTAAAAAGGACCGGCTGCTGCTGCAGGGCTACTGCCACTCTGCCTCCAAACGCATCCTGGAGGGCCTGCAAGGCGAGTGCACCCTGAGGCAGGCCGTGGCCTATCTGTCCATCGCCATCATGGCCTCTGGATGTGAGGCAGCAAACTCATTGATGGAAAGGGCCAGGTGCTATGTCTTGTTGGGCCAACGCAAGACAGCCGTCTTTGATTTCAGCTCCATCTTGAAAGAGCACCCTGACCATGTACAGGCCCTCTGTGGAAGAGGCTTCACCTATCTCATGCTAAACCAACAGAAGGAATGCACTCAGGATATACTGGCAGCACTTCAAATAAGCATGGACGCCGTCACCAAAGACATCCTATCGCTCAAAGATAAGGCAAGGAAACTGGTCTGTGATTGGCTGCAGCAGTACTGCCGGACCAATCTGTCTGAGATCCTGGCGGCTAAGGCCGTCCCCTGCCAGGAAGAAGAGCTTCGAGAGGCCTTTCTAATTGGAGGAGTCCTGATGAGGACTGACTGCCGAGACACCAGATGTCATCTCCTCTACGTAGATATACTACTGGCCAAAGGTGAGGTGAAATCAGCAGGAGCTCACCTGGCTCAGGTGTTTGGCCAGGATCCCCGGGAGGCTGCAGCTCAGGCCAGGGTGGGCGTGGTGGAGGCCTGGCAGCAGAATTACCGCGGAGGCGGCGCCAGGCTGAGCAAGCTGACCGAAAAGGAACCCTCTACTCTGGACTTCCTGCTGACCCTCATTCCCCCGATTCACAGGAAACACATGGCACAAGCAGCAGCCCAGGAAGCAGGCAGTGTCTCAGCGAGTGGCCATTGGGAGCAAGCCCTGGCCCTTCTGACCGTGGCTGTGCGAGCCGCGGCAGAGCTTCGACTGCAGTTCCTGCGCCAACGGGCCGCTTGCCTCGCCCAGCTCGACCTGCATGAACGGGCTGTGGCCGACCTGGACCGGGTCATCTGGAGCCACGATGACCCCTCCGACGCTACAGTCTCCGGAGCCCCAGAAGAGCCTCACGTCTGGGCAGACGACCTGTGTCAGCGAGGCCGCAGCCTGGTGCTGTGCTCCCACGAGGGGCCCGCCCTGGACGACTTCAGCCGGGCCCTGGAGCTCCACCGGGGCCAGGCTTTGCTGTGTGTGGAGGCCGGGCTGGGAAGGTCCCGCCTGGCCGAGTGCTTCCTGCGTATGGCCCTGCAGCACTACGGAGAGCAGCAGCTCAGTAAGGCCTGGAGGTTGACCGAGAGCGGCCTGTTGGTGGACAGTGAGCACATGGAGCTGCGCAGGCTCAGGGCCAGGGTCAAGCGGGAGCACTGCAGCCCCTGCATTGTACACTAGATTAGTGTACCTTTGTAGTGCCTTGAGATACCATTGTACTGTACTTTGGAAGAAACCCTTCCAAGTAAAGCTCACTTAAAGTAACCCTATGACAATTTGTTTTTATGTACACTAAACCTCAGTTAATTGCTACCGCGAAAATATTTAGAATGTCAAAGGGGAAGCTGCATTTATATCTTATTCAGAATGAGGGCTAATAGAATAATGAGCATTTCCCTTGGGTAGTGTTTTTGTAAACATGGAAAAGTCATAGAATTTATTTGTAATATGTGAGTATTTTGCAAtcacattcctgacatttaataggAAATGGCGTGGGAACAATGGATATTCCCTGGGGCTTCAATTCAATATACTTGATACCTGGTTGATATGGTGCCTTGTGGTGGTTGAAAGAATCCCAAAGGAACAAACAAGTAACACAGGTTATTTCTGTGTAATTACGTTTGACTATTTTACTACATAACTAGTAAGACTGTAAAGATGCAACTACACACAACaacttttgttttatttttgtgtATTTTTGAATTCATGTGTAATAAACCAAATGTCTTCGACAGCAAttacttttttttacattcaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1559068 lncRNA downstream 3963 31946321 ~ 31946556 (-) True G1364313
TU1558863 lncRNA downstream 28136 31920896 ~ 31922383 (-) True G1364124
TU1558860 lncRNA downstream 31159 31913091 ~ 31919360 (-) True G1364123
TU1558854 lncRNA downstream 43029 31901494 ~ 31907490 (-) True G1364117
TU1558855 lncRNA downstream 47209 31899840 ~ 31903310 (-) True G1364118
TU1559112 lncRNA upstream 59412 32017413 ~ 32017647 (-) True G1364347
TU1559122 lncRNA upstream 73893 32031894 ~ 32032230 (-) True G1364357
TU1559123 lncRNA upstream 74350 32032351 ~ 32032690 (-) True G1364358
TU1559131 lncRNA upstream 86590 32044591 ~ 32045093 (-) True G1364366
TU1559106 lncRNA upstream 96608 32054609 ~ 32056554 (-) True G1364341
XM_021565602.2 mRNA downstream 221576 31712301 ~ 31728943 (-) True si:ch211-28p3.4
XM_036946722.1 mRNA downstream 221595 31712301 ~ 31728924 (-) False si:ch211-28p3.4
XM_036946721.1 mRNA downstream 221596 31712301 ~ 31728923 (-) False si:ch211-28p3.4
XR_005036505.1 mRNA downstream 454219 31475320 ~ 31496300 (-) True LOC110491813
XM_036946719.1 mRNA downstream 454251 31474791 ~ 31496268 (-) False LOC110491813
XM_036946723.1 mRNA upstream 8721 31966722 ~ 31989796 (-) False LOC110491820
XM_021565608.2 mRNA upstream 8998 31966999 ~ 31989783 (-) True LOC110491820
XM_021565612.2 mRNA upstream 98947 32056948 ~ 32096133 (-) True LOC110491822
XR_002468909.2 mRNA upstream 123706 32081707 ~ 32086786 (-) True LOC110491823
XM_036946725.1 mRNA upstream 272286 32230287 ~ 32301791 (-) False LOC110491825
TU1558829 other downstream 64407 31885749 ~ 31886112 (-) True G1364105
TU1558520 other downstream 299822 31639437 ~ 31650697 (-) True G1363836
TU1556170 other downstream 2025365 29923871 ~ 29925154 (-) True G1361619
TU1555797 other downstream 2452964 29497113 ~ 29497555 (-) True G1361290
TU1554186 other downstream 3769579 28177715 ~ 28180940 (-) True taok2b
TU1559113 other upstream 60793 32018794 ~ 32019498 (-) True G1364348
TU1559908 other upstream 676464 32634465 ~ 32635511 (-) False G1365099
TU1559909 other upstream 676562 32634563 ~ 32635511 (-) True G1365099
TU1561599 other upstream 1726010 33684011 ~ 33684473 (-) True G1366703
TU1561654 other upstream 1789399 33747400 ~ 33751407 (-) True G1366756

Expression Profile