RNA id: trnat-agu-56


Basic Information

Item Value
RNA id trnat-agu-56
length 74
RNA type mRNA
GC content 0.46
exon number 1
gene id trnat-agu-56
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 71023961 ~ 71024034 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggtgctgtggcttagttggttaaagtgcctgtctagtaaacaggagatcctgagttcaaatctcagcagtacct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1606353 lncRNA downstream 34431 70962973 ~ 70989530 (-) True G1406388
TU1606327 lncRNA downstream 117745 70905290 ~ 70906216 (-) True G1406367
TU1606325 lncRNA downstream 119888 70903817 ~ 70904073 (-) True G1406365
TU1606324 lncRNA downstream 122056 70901634 ~ 70901905 (-) True G1406364
TU1606321 lncRNA downstream 122957 70900631 ~ 70901004 (-) True G1406361
TU1606377 lncRNA upstream 49073 71073107 ~ 71076732 (-) True G1406407
TU1606391 lncRNA upstream 70945 71094979 ~ 71095352 (-) True G1406416
TU1606394 lncRNA upstream 73965 71097999 ~ 71098250 (-) True G1406419
TU1606396 lncRNA upstream 75211 71099245 ~ 71099572 (-) True G1406421
TU1606478 lncRNA upstream 133296 71157330 ~ 71157705 (-) True G1406482
trnah-gug-41 mRNA downstream 285 71023605 ~ 71023676 (-) True trnah-gug-41
trnah-gug-40 mRNA downstream 1661 71022229 ~ 71022300 (-) True trnah-gug-40
trnat-agu-55 mRNA downstream 2679 71021209 ~ 71021282 (-) True trnat-agu-55
trnat-agu-54 mRNA downstream 4040 71019848 ~ 71019921 (-) True trnat-agu-54
trnah-gug-39 mRNA downstream 4398 71019492 ~ 71019563 (-) True trnah-gug-39
trnah-gug-42 mRNA upstream 947 71024981 ~ 71025052 (-) True trnah-gug-42
trnat-agu-57 mRNA upstream 1303 71025337 ~ 71025410 (-) True trnat-agu-57
trnat-agu-58 mRNA upstream 2664 71026698 ~ 71026771 (-) True trnat-agu-58
trnah-gug-43 mRNA upstream 3684 71027718 ~ 71027789 (-) True trnah-gug-43
trnat-agu-59 mRNA upstream 4040 71028074 ~ 71028147 (-) True trnat-agu-59
TU1606185 other downstream 281782 70735647 ~ 70742179 (-) True G1406228
TU1605893 other downstream 802705 70219877 ~ 70221256 (-) True LOC110492660
TU1605761 other downstream 928420 70078657 ~ 70095541 (-) True G1405917
TU1604821 other downstream 1505848 69517755 ~ 69518113 (-) True G1405172
TU1604630 other downstream 1743602 69277827 ~ 69280359 (-) True G1405016
TU1606514 other upstream 236288 71260322 ~ 71260817 (-) True G1406514
TU1606849 other upstream 478445 71502479 ~ 71527677 (-) False G1406752
TU1606887 other upstream 505045 71529079 ~ 71545845 (-) False G1406752
TU1606851 other upstream 510531 71534565 ~ 71544501 (-) False G1406752
TU1606876 other upstream 512278 71536312 ~ 71545845 (-) False G1406752