Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00000039 |
| length | 942 |
| RNA type | mRNA |
| GC content | 0.49 |
| exon number | 4 |
| gene id | XLOC_000017 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007112.7 |
| NCBI id | CM002885.2 |
| chromosome length | 59578282 |
| location | 260039 ~ 296057 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0007018 | microtubule-based movement | biological_process |
| GO:0007080 | mitotic metaphase plate congression | biological_process |
| GO:0005524 | ATP binding | molecular_function |
| GO:0000166 | nucleotide binding | molecular_function |
| GO:0003777 | microtubule motor activity | molecular_function |
| GO:0008017 | microtubule binding | molecular_function |
| id | description |
|---|---|
| ko01009 | Protein phosphatases and associated proteins |
| ko03036 | Chromosome and associated proteins |
| id | description |
|---|---|
| ZDB-GENE-060929-860 | Predicted to enable microtubule binding activity and plus-end-directed microtubule motor activity. Predicted to be involved in microtubule-based movement and mitotic cell cycle. Predicted to be active in microtubule. Human ortholog(s) of this gene implicated in primary autosomal recessive microcephaly 13. Orthologous to human CENPE (centromere protein E). |
| ensembl_id | ENSDART00000148261 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00002804 | lncRNA | upstream | 50838 | 237391 ~ 241707 (+) | True | XLOC_000015 |
| TCONS_00002803 | lncRNA | upstream | 55122 | 236400 ~ 237423 (+) | False | XLOC_000015 |
| TCONS_00002802 | lncRNA | upstream | 57012 | 227253 ~ 235533 (+) | False | XLOC_000015 |
| TCONS_00002801 | lncRNA | upstream | 69741 | 221385 ~ 222804 (+) | True | XLOC_000014 |
| TCONS_00003002 | lncRNA | upstream | 135263 | 156792 ~ 157282 (+) | True | XLOC_000011 |
| TCONS_00003003 | lncRNA | downstream | 59424 | 355481 ~ 358562 (+) | False | XLOC_000018 |
| TCONS_00003004 | lncRNA | downstream | 59714 | 355771 ~ 358562 (+) | True | XLOC_000018 |
| TCONS_00000055 | lncRNA | downstream | 284631 | 580688 ~ 586501 (+) | True | XLOC_000023 |
| TCONS_00003005 | lncRNA | downstream | 498919 | 794976 ~ 898180 (+) | False | XLOC_000026 |
| TCONS_00003006 | lncRNA | downstream | 498919 | 794976 ~ 911551 (+) | True | XLOC_000026 |
| TCONS_00000038 | mRNA | upstream | 12286 | 277731 ~ 280259 (+) | False | XLOC_000017 |
| TCONS_00000037 | mRNA | upstream | 22662 | 267035 ~ 269883 (+) | False | XLOC_000017 |
| TCONS_00000033 | mRNA | upstream | 34407 | 245076 ~ 258138 (+) | True | XLOC_000016 |
| TCONS_00000032 | mRNA | upstream | 48747 | 230363 ~ 243798 (+) | False | XLOC_000015 |
| TCONS_00000031 | mRNA | upstream | 50838 | 227241 ~ 241707 (+) | False | XLOC_000015 |
| TCONS_00000040 | mRNA | downstream | 122812 | 418869 ~ 443759 (+) | True | XLOC_000019 |
| TCONS_00000041 | mRNA | downstream | 198240 | 494297 ~ 505620 (+) | False | XLOC_000020 |
| TCONS_00000042 | mRNA | downstream | 198284 | 494341 ~ 497021 (+) | False | XLOC_000020 |
| TCONS_00000043 | mRNA | downstream | 198816 | 494873 ~ 496858 (+) | False | XLOC_000020 |
| TCONS_00000044 | mRNA | downstream | 200211 | 496268 ~ 505617 (+) | True | XLOC_000020 |
| TCONS_00000003 | other | upstream | 279288 | 12129 ~ 13257 (+) | False | XLOC_000001 |
| TCONS_00000047 | other | downstream | 217956 | 514013 ~ 515322 (+) | True | XLOC_000021 |
| TCONS_00000052 | other | downstream | 241532 | 537589 ~ 546217 (+) | False | XLOC_000023 |
| TCONS_00000053 | other | downstream | 280387 | 576444 ~ 576521 (+) | True | XLOC_000024 |
| TCONS_00000060 | other | downstream | 922634 | 1218691 ~ 1218805 (+) | True | XLOC_000029 |
| TCONS_00000061 | other | downstream | 1279426 | 1575483 ~ 1575563 (+) | True | XLOC_000032 |
