RNA id: XM_021568316.2


Basic Information

Item Value
RNA id XM_021568316.2
length 1309
RNA type mRNA
GC content 0.46
exon number 10
gene id bdh2
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 35655475 ~ 35677264 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACCTTTCAGTTGGTTACGATCCACAAGTGCACATTTTAAAGAAGAAGAATCAGCTCGCGAGCTACTTCCTTCTACAGAAGCCAATAAGAATTTAGTAAATGGGCACGAGGCATCTCCTGACTGAAGTTCATGGTCTGTTGTCGTTGCAGAGCGTTAAATTACCTGTAGAATTAAACACTGCATCATCATGGGCCGCCTGGATGGGAAAGTCATTGTGTTGTCAGCAGGAGCCCAGGGCATTGGAAGAGCTGCAGCCATTGCCTTTGCCAAAGAAGGAGCTCAAGTCACCGCAACAGATATCAATGGAGAGAAGCTGAAGGAACTGGATGGCCACCCTGGTATCAAAACTAAGGTGGTGGATGTGACCAAGAAGGACCAAGTGGAAGCGCTGGCCAAGGAGTTTGACCACATAGATGTGCTGTTCAATGTTGCCGgGTTTGTCCATCACGGCTCCATCCTGGACTGCGAGGAGGCGGACTGGGACTTCACCATGAACGTCAACGTCCGCAGCATGTACCTCATGAGCAGGGCTTTCCTACCCAAGATGTTGGCCAAGAAGTCTGGGAATATCATTAACATGGCGTCTGTGGCCTCCAGTATAAAAgGTGTGGTGAATCGATGCGTGTACAGCACCTCCAAAGCTGCTGTCATTGGGCTCACCAAATCTATAGCAGCCGATTTTCTCGAGCAAGGCATTCGCTGTAACTGCGTATGTCCTGGGACCGTGGACACCCCGTCTCTGAGGGGGAGAATCCAGGCTCAGCCTAATCCAGAACAGGCCCTAAAAGACTTCATGGCGAGACAGAAGACGGGACGAATGTGCACTGCCGAGGAGGTGGCACACCTCTGTGTCTACCTGGCCTCAGACGAGTCTGCCTATGTCACTGGAACTGAGCATATCATTGATGGAGGATGGAGGCTCTGAAGAACCTACGGTACAGAGCACAAGGAAGCTCGAGAAACCTGCCACGAGTTACTgttagttacagtaatagaaatTTCAGTGGCCTATGCCTTATATGGAATGCCAAAATCTTGACTTATTTTGAAATCATACAGAAGCTGCTGACATTTTTACAGATTTTTCAAATTtttcatgaagtgtttgattatgTGGTGTACATTCAATATAGTCTCTAAGAATAATGACTTCTGGTTTCCTTGTTTTGTAGCACCAAAAGTACCTCGTAAGTGTACAATAATATACTGTAATCAACTAGTTTTAAACATCCATCTCATTGTACATGTGATTTTGAGCTCATTGACACAATGATTACATATAGCTAATAAACACAATGCAATACTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1652059 lncRNA upstream 16031 35638494 ~ 35639444 (+) True G1443197
TU1652060 lncRNA upstream 18744 35633485 ~ 35636731 (+) True G1443198
TU1652049 lncRNA upstream 33020 35622015 ~ 35622455 (+) True G1443187
TU1652045 lncRNA upstream 39323 35615413 ~ 35616152 (+) True G1443183
TU1651951 lncRNA upstream 135193 35517766 ~ 35520282 (+) False G1443097
TU1652126 lncRNA downstream 280302 35957566 ~ 35957888 (+) True G1443247
TU1652226 lncRNA downstream 280991 35958255 ~ 35958545 (+) True G1443346
TU1652227 lncRNA downstream 281345 35958609 ~ 35958813 (+) True G1443347
TU1652229 lncRNA downstream 284947 35962211 ~ 35962441 (+) True G1443349
TU1652232 lncRNA downstream 292326 35969590 ~ 35969957 (+) True G1443352
XM_036949795.1 mRNA upstream 263120 35368886 ~ 35392355 (+) False LOC110493172
XM_021567460.2 mRNA upstream 263120 35369877 ~ 35392355 (+) True LOC110493172
XM_036949791.1 mRNA upstream 343659 35279996 ~ 35311816 (+) False rrbp1b
XM_021568317.2 mRNA downstream 12530 35689794 ~ 35708517 (+) True cfap58
XR_005036967.1 mRNA downstream 39538 35716802 ~ 35727758 (+) False aars2
XM_021568318.2 mRNA downstream 39538 35716802 ~ 35741595 (+) False aars2
XM_021568320.2 mRNA downstream 39538 35716802 ~ 35741595 (+) True aars2
NM_001124229.1 mRNA downstream 99232 35776496 ~ 35793723 (+) True LOC100135837
TU1651374 other upstream 470935 35168898 ~ 35184540 (+) False LOC110493802
TU1651377 other upstream 470935 35168898 ~ 35184540 (+) True LOC110493802
TU1650494 other upstream 1352866 34301487 ~ 34302609 (+) False LOC110493778
TU1650503 other upstream 1360146 34290041 ~ 34295329 (+) False LOC110493778
TU1649941 other upstream 1679000 33976193 ~ 33976475 (+) True G1441315
TU1652130 other downstream 69608 35746872 ~ 35751790 (+) True G1443251
TU1652322 other downstream 561680 36238944 ~ 36240725 (+) False LOC118940407
TU1652778 other downstream 653971 36331235 ~ 36375374 (+) True G1443844
TU1652966 other downstream 815113 36492377 ~ 36529730 (+) False LOC110493174
TU1652965 other downstream 865755 36543019 ~ 36557771 (+) True LOC110493174

Expression Profile