Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00047710 |
| length | 873 |
| RNA type | mRNA |
| GC content | 0.43 |
| exon number | 5 |
| gene id | XLOC_024043 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007136.7 |
| NCBI id | CM002909.2 |
| chromosome length | 37502051 |
| location | 19522954 ~ 19537323 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0048514 | blood vessel morphogenesis | biological_process |
| GO:0072554 | blood vessel lumenization | biological_process |
| GO:0005737 | cytoplasm | cellular_component |
| id | description |
|---|---|
| ZDB-GENE-040121-4 | Predicted to enable lipid binding activity. Acts upstream of or within blood vessel lumenization. Predicted to be located in early endosome membrane. Is expressed in blood island; notochord; posterior lateral mesoderm; and vasculature. Orthologous to human SH3GL3 (SH3 domain containing GRB2 like 3, endophilin A3). |
| ensembl_id | ENSDART00000144023 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00049225 | lncRNA | upstream | 84505 | 19443951 ~ 19445512 (+) | True | XLOC_024041 |
| TCONS_00049224 | lncRNA | upstream | 167930 | 19356344 ~ 19362087 (+) | True | XLOC_024040 |
| TCONS_00049222 | lncRNA | upstream | 605626 | 18920543 ~ 18924391 (+) | False | XLOC_024031 |
| TCONS_00047713 | lncRNA | downstream | 16515 | 19552326 ~ 19556276 (+) | True | XLOC_024044 |
| TCONS_00047728 | lncRNA | downstream | 198349 | 19734160 ~ 19739965 (+) | False | XLOC_024051 |
| TCONS_00047734 | lncRNA | downstream | 335061 | 19870872 ~ 19883530 (+) | False | XLOC_024054 |
| TCONS_00049226 | lncRNA | downstream | 451257 | 19987068 ~ 19987387 (+) | False | XLOC_024057 |
| TCONS_00049039 | lncRNA | downstream | 451268 | 19987079 ~ 19997540 (+) | False | XLOC_024057 |
| TCONS_00047705 | mRNA | upstream | 8772 | 19485198 ~ 19521245 (+) | False | XLOC_024042 |
| TCONS_00047706 | mRNA | upstream | 9428 | 19489370 ~ 19520589 (+) | False | XLOC_024042 |
| TCONS_00047703 | mRNA | upstream | 182940 | 19238175 ~ 19347077 (+) | False | XLOC_024039 |
| TCONS_00047702 | mRNA | upstream | 182940 | 19238175 ~ 19347077 (+) | False | XLOC_024039 |
| TCONS_00047704 | mRNA | upstream | 183010 | 19238180 ~ 19347007 (+) | True | XLOC_024039 |
| TCONS_00047711 | mRNA | downstream | 5208 | 19541019 ~ 19556986 (+) | False | XLOC_024044 |
| TCONS_00047712 | mRNA | downstream | 5210 | 19541021 ~ 19556971 (+) | False | XLOC_024044 |
| TCONS_00047714 | mRNA | downstream | 21817 | 19557628 ~ 19561261 (+) | True | XLOC_024045 |
| TCONS_00047715 | mRNA | downstream | 130810 | 19666621 ~ 19668179 (+) | True | XLOC_024046 |
| TCONS_00047716 | mRNA | downstream | 134462 | 19670273 ~ 19676975 (+) | False | XLOC_024047 |
| TCONS_00047707 | other | upstream | 37397 | 19489550 ~ 19492620 (+) | True | XLOC_024042 |
| TCONS_00047695 | other | upstream | 418209 | 19095302 ~ 19111808 (+) | False | XLOC_024035 |
| TCONS_00047675 | other | upstream | 1041011 | 18482906 ~ 18489006 (+) | True | XLOC_024022 |
| TCONS_00047672 | other | upstream | 1432156 | 18097747 ~ 18097861 (+) | True | XLOC_024017 |
| TCONS_00047663 | other | upstream | 1651385 | 17862368 ~ 17878632 (+) | False | XLOC_024013 |
| TCONS_00047732 | other | downstream | 238748 | 19774559 ~ 19774675 (+) | True | XLOC_024053 |
| TCONS_00047755 | other | downstream | 1056672 | 20592483 ~ 20592597 (+) | True | XLOC_024066 |
| TCONS_00047756 | other | downstream | 1068085 | 20603896 ~ 20604012 (+) | True | XLOC_024067 |
| TCONS_00047785 | other | downstream | 2689991 | 22225802 ~ 22238992 (+) | True | XLOC_024087 |
| TCONS_00047798 | other | downstream | 3051485 | 22587296 ~ 22594781 (+) | False | XLOC_024094 |
