RNA id: XM_036951644.1


Basic Information

Item Value
RNA id XM_036951644.1
length 5829
RNA type mRNA
GC content 0.54
exon number 25
gene id LOC110495394
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 8623967 ~ 8676626 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTGGGCAGACTGTCAGTCCCGGTGCTTCCTGCTGTACTCTCCAATTTCCCGTTTCGTCTTGTGCTGAATGTTAGCCTCGGTCTGTTGCGGCTACACACTGATCTTTCCCTGGCCACACGCAGCTGTTTTTATAAATCATTCTGTTTTTGTCAACGTTTCTGGTCTGTGATGGCCATGAGCAGCTTGGAGGGCAGTGCCACCGAGGCCGTTCAGATCTGGACACCAGAGACTCCGAGCTGGTGCTAAGGACATGGGACTCTCCCTCAGAGTTAGCGACAGGCCCAGCAGCACGAGACGTTACAGTGACAAACCGGCGGTGGCGCAGGACTGCTGCCCTCAGAGCCTTCTCAACCCCTGCAGGACTTCACCACCACAGGCCCAGCAGCTCCCAgACCCCAGTAACAGCAGTGTTGTATAGAGACTCTCTGTAAGCTGTGCGTCTGATGAGGATGTCTGATCCTGTTACTGTAAAGGACATCAGTAGGACTGACACCATGAAGGTTTGTGAGGCTGGAGTGGAGCTGGAGGCAGCAGACTGGACCGGCACCACAACATTAGGAgcagacagcagacggaacgGTGTGAAGGACAAACCCAAACCGGCTGGGAGCCTGGTGCCGGAACACAATGCCACCGGTCACCAAGACGGAAGCTGCTGTGACAACAAGAGGGAAACATCACAGCCGTCTCCTGTATCAGCTGGCCAGTCGGTGAGGGGCTCTAAGTCCAGGGCCAAGGTAAAGTTAGTACGGAGCCTGGCTGTCTGTGAAgagtcctctcctccctttctaaCTGCACACCAGCTGACACCAGATCCTCAGATATCCCAGTCCTTTGATAAGGAGGAGCTGTCTGccaaggaggagaaagagaaggtggAGAAACCAGAGAAGATGTCCAGGAAAATGCTGTCAAGAGATTCCAGCCAGGACTACACAGACTCTACTGGAATAGACCTGCATGAGTTCCTGGTCAACACTCTAAAGAACAACCCCAGAGACAGAATGATGCTGTTGAAGTTGGAGCAGGACATTCTGGATTTTATCAGTAATAATGAAAGCCAGAAGAGAAAATTCCCTCCCATGACTTCGTACCATAGAATGCTGCTACATCGAGTGGCTGCCTACTTTGGCATGGATCACAATGTTGACCCCACTGGGAAGTCTGTCATCATCAACAAAACTAGCAATACAAGAATACCAGATCAAAAATTCTCAGAACACATAAAAGACGACAAAACGGATGATTTCCAAAAACGCTACATTCTCAAAAGAGACAACGCCAGCTTCGACCGGGAAGACGGCATGATACGAATGCGCCTGAAAGACGACAGGAGAAGCAAATCTAtcgaggagagggaggaagactatcagagagccagggacaggaTATTTGCACCAGATGGAGATCATTTCCATCTAGATGGAAGGAGCCCTGATGAAGAGGCTTGTATCAGCACTCAACAGAGGCGGCAACTCTTCAGACTAGGGGACGGGCGGTCAGCCAGCAGTAGACAGAGCAGCTCTGAGAATGACCCCAAGAACTGTGATGCCCGGCCGTGGAGCAGCACTGATTCAGACAGCTCCAACCGTAACCTGAGGCCGACCATGACCAAGGCCAGCAGCTTCAGCAGCATCTCTGTCCTcatcagaggagacagtacagcCAGCAGCAAGAGCACCGGACGCCTCTCCAAAACAGgtTCTGAGTCTTCTAATAGTGTAGGGTCTTCTACGAGTTCCATCTCTCGCCCCCAAGTACTCCACCTGCCTCTCCATGTCCCAGCTGCTCTATCCCAGGCAGCCGGCCCTGTCGGGGGCCCCAGCACGGTGCTACctacaccctcctcctcctctgcgtCCTCCGCTGCCACGGCCCCCAGCAGTAGTAGAGCTTCTGTACACTGTGATCGGGGCAGCAGGAACGGCCCGGCGCCTGCATCCGGCCCAGCGCCAACCCAGGCCACTGCTAATGCTACTAGTTACTATTTGCTTCCTCCGGAAGCCACAGGGATACCGCCTGGCAGTATACTGGTCAACCCACACACAGGCCAACCCTTTGTGAACCCTGACGGCAGTGCTGTGGTCTACAACCCCTCGATGACCTCACAGCAAGGTGGGAGGAGCCAGCAGCCCTTGGCCCCTCCCCTACCGCCCCCAGCCCCGCACCAGCCAGCCAATCACGTCCTCTCCCAGCCGGTTCGGCATCTCCAGCCCTCTGCTCCACAGCCGATCCAGTACTCAACCATCTCTTACCCTCCTCCTCAGTTCCTGCCACTCTCCTCTAACCAACAATACACTTTGCAAGAAGGGCTGGCTGCCCAGTTCAGCCAGATGAGTGTGGTGCGCCAGGCGTCCAGCGACGTCACTAACGGCGGCCCCCACCCTGCCATGTACCCCTCGGGCCCTGTGGTGCTCCAGGCCCCCCTGCAGCACCAGCAGACTGGCTACATGGTGGCCCCTCCAGGGGCCCCTGTGGTGGGGCAAACCCAGGCCTACCCCGGCCCTGCACACCCTATGAGCCAGCCGGTCATGCAGCAGCAGCAGGGCTACATGCCACAGCAGatgCACACATGTTACTGTGCTCCAGCCCAGGACCCCCACTCCCACTGCAACCAGCACTATCGCCCTGTCAGCCCCGTGCACTACACCAGCCCCCAGACCCAGCCTCTTCCCCAGCagccagGTTACCATGCTGTGATGCCAAATCCGCCCCAAGGCCCTCAGCATCAGAACCTGGTGAACAACCAGCAGCACAGCAATATGGGAAATCACATGACGGCCTTCATGGTCCAGTACCCTTCAATGCCGTCTTATCAGGTATCAATGCCCCAGGGGTCTCAGAACATGCCTCCACATCAGCAGGCATGTCAACAGCCCATGATGATCCAGAGCCATCCAAGCCAAGCTCCCATGGCCATGTCAGGCATGCAGGTTTACTACAGTGTCATGCCCCCAAATCAACACAGCACCATGAGTCCATCGATGGGTTTCTTACCTCCTCCTGGGGCAGAGCAGATGCAGTTTCCCCGGGCTTCGTCTCCGTGTGGAACCCAGCAGCTACCAGGACAGCAGTGCTCAGGTGTGCTCCCCGGTCCTCACAGTGGTGGGATGGTGATGATGCAGCTGACCCTGCCCCCTAACCACCAGCCCAGAGCCCACTCCCCTCCACAGTGGAAACACAACAGATACTACAGTCTGGATCACACACGCAGCCAGAGGTCCTCAGAACAACTAAACAACTCACAGAACAGTCCCCAGCTGGGTGGCCCCAGCACGCCTCCAGCCCAGCCCCAAGCCCCAACCCACCAACTCACCTCCATAAAGAACCTCCGCTCGGCCGGCCTCACCCCCATCCCCATAATGACCCAGTTTCCCAGACCCTTCGGCCCAGGGCAGGCAGTGGACGGCAGATACCCATTGCTGGGTCAACCCCTCCAGTACAACCCTGCCATCAGGCCTCCGCTGATCCATGGCACACACCACATGATCCCCAACCACCACCACGGCCCAATGGGAATCCGGCATCATGGGGGGCGAGGGAGGAGACCACCACCTAGGAAGTCATTATCATCAGATCTTAGTGTAGGTGACCCAGTGAACGGTGGAGTCCTGGAGGTGCTGGAGCTACCAGAGGGCATCAGTCGTACGGAGGCAGACTCTCTCCTGGGGGAACTGTACAGAGGAGGGGCCATGATCAAGTGGTTGTCTGAGACCCAACAGCACCAACACCAGTCTGGTGAAACCCTGCTGAAGCACTGTGGGGCTGGGGGGGACGGTAACAACGGtgacacaaacactgacactacttcCTGTTCCAAACCCCCCAGTAGTAACCATAACGACCTGGCGTCCACCTACACCATCCTGGCTGTGTTTCCCTCCAGGTACGCAGCTCAGAATGCCTTGCTCAGACACAGTGGCCCTGCCGGCCCTGGGCCCCTTCTTACCACCACGTTCAAACTCAGAACTAGCAAGAGACACTCTGATGAGTTTCACAACCAGGAGAGGACCACCTCTCAATAGCAGGGTGGGGTGCTGTAGCCAGCCAACCAGGAGAGGACCACCTCTCAATAGCAGGGTGGGGTGCTGTAGCCAGCCAACCTGGAGAGGACCACCTCTCAATAGCAGGGTGGGGTGCTGTAGCCAGCCAACCTGGAGAGGACCACCTCTCAATAGCAGGGTGGGGTGCTGTAGCCAGCCAACCTGGAGAGGACTTGCTCTCAAAAGCAGGGTGGGGTGCTGTGGCCAGCCAACCAGGAGAGGACCACCTCTCAATAGCAGGGTGGGGTGATATGTTACTAGGGCCCCTGAGAGGTTGTTCTAGGGGCTCCCACGGGCTGCTATGAGGGACTGCCGGTCACGGCCCTTCGCCATGGCCcctccaccccaccaccacctccactgcTGCCATCGGCCAACCAATCAGACACCCCTCTTCTGCAAGCATCACTCACTAGTCTCCACTCCCCACCGGACTGACAGGCAGACTGATGGAGTATCACTCGGTTGGCATTATCTAACAGCTTCTTCACTTGAGTTGTAGAGGCTTTCTGGGAATGTGTTAATGCCTTTGGGAACGTTCTCTACTTTTTGAGATGAAAATGTGTAAAAAAGGATCGGACAACACACCAATGTTgaaacacaaagacacagacagaaaaacaggaaGTTCCAAAAGTGTCATATTTTATTTGCAGACAGAACGTGGTAAAGGAAGCAGCatgttttatttagtttagttttaTGTTTGTTAAAAGCTGCAGTCAGAACACCCAAAGCAGGGAGGTACTCATTCATTACAAGAGGATAATATACCAAGTGTCTCTCATTGGACAAGAGTGTTTCTCTTTGGGCCGGATTCTGATTTTGAGATCTGCAACGGATAACTCCAGATTTCAGTTTAAAATGTCCCGTTGATTTACACGAACGCCTGAGTTGTGCCGGCGTATAATATCAAGTTAGGATTCGGCCCGTAGAGTCAGTCTCCCGTTAGCCAGTTGGTGTGCTGCTACAACAGAAGATTAGTCTTCTAGAACAaggttgtgtcccaaacggcaccctatttccctatatagtgcactacttaggtcccatagggctgtggtcttatgagccctatgggacctggtctaaagtagtgcactatctagcgaatagggttccatttggaacataGCCCAACAGAATGGTGCCTTCTAACTGGGCTCGGGTGCCACTATCCACCCCTCTCCCCAACACCCCTAAAGACAAGACATCCCATCCAATTCCATTTGTATAAACCCTGACCCACCGATTTCTTTCACAATGAATCATCACTGATATGGTAGCTAAATTATTCTCACTTTTCTACACAGTAAATGGTATCTTTGCACTGGCACAAgggagaaatgtttgttttgataGTGGTTTATCGTTTTTAAGGAAAAGAGGAGAAGAACCTTGGTGCATCTCATTGATGGTTTATTCTATTTGAGCTATTCTAAAATGAATGTCCTTCTCACcaacctcctccaaccctctctgtTCAGTCCACCCATTCCCTGCTTATGTATCAAATGgcattccctatgggccctggtcaaaagtagtgcactatatagggtggcCAGGCCAAATTCCTTTCATGTTTAGTTCGTTTTACCGTTCGTATCCTATCAGAAGGGTCACTGGAAAAGTGTGCATTATTCACAACACAACCCCCATCACACCCAAACAAATGTCTATTTAAGatggttgttgttggtggtggattCAGGAGAGATGTCCAGTCTGCTGGTGCAAGATGTTTTTATTTCTGTTTGAAACCAATAAATGTTTACACCAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1732761 lncRNA upstream 557 8623967 ~ 8624408 (+) False LOC110495394
TU1732944 lncRNA upstream 1382 8623024 ~ 8623583 (+) True G1514294
TU1732943 lncRNA upstream 2190 8622463 ~ 8622775 (+) True G1514293
TU1732942 lncRNA upstream 2837 8621898 ~ 8622128 (+) True G1514292
TU1732941 lncRNA upstream 4760 8619974 ~ 8620205 (+) True G1514291
TU1732965 lncRNA downstream 46580 8723206 ~ 8724789 (+) True G1514312
TU1732969 lncRNA downstream 51139 8727765 ~ 8729055 (+) False G1514316
TU1732970 lncRNA downstream 51139 8727765 ~ 8728586 (+) True G1514316
TU1733695 lncRNA downstream 68979 8745605 ~ 8745807 (+) True G1514867
TU1733697 lncRNA downstream 69601 8746227 ~ 8747165 (+) True G1514869
XM_036951635.1 mRNA upstream 113769 8506139 ~ 8511196 (+) False LOC118936321
XM_036951636.1 mRNA upstream 118711 8498352 ~ 8506254 (+) False LOC110528849
XM_036951631.1 mRNA upstream 145604 8475086 ~ 8479361 (+) False LOC110528836
XM_036951657.1 mRNA downstream 871 8677497 ~ 8682383 (+) False LOC110495395
XM_036951655.1 mRNA downstream 1705 8678331 ~ 8682383 (+) False LOC110495395
XM_036951656.1 mRNA downstream 2036 8678662 ~ 8682383 (+) False LOC110495395
XM_036951659.1 mRNA downstream 41848 8718474 ~ 8744053 (+) True LOC110495396
XM_036951660.1 mRNA downstream 146903 8823529 ~ 8835425 (+) False LOC110495389
TU1732918 other upstream 48140 8576493 ~ 8576825 (+) True G1514274
TU1732862 other upstream 120629 8498550 ~ 8504336 (+) True LOC110528849
TU1732800 other upstream 212166 8347227 ~ 8412799 (+) True G1514180
TU1732572 other upstream 609935 8013860 ~ 8015030 (+) True G1514045
TU1732457 other upstream 823907 7794270 ~ 7801058 (+) True LOC110511355
TU1732757 other downstream 1822 8678448 ~ 8680210 (+) True LOC110495395
TU1733898 other downstream 323772 9000398 ~ 9003126 (+) True G1515005
TU1734946 other downstream 1297902 9974528 ~ 9975306 (+) True G1515776
TU1735043 other downstream 1493476 10170102 ~ 10171956 (+) True G1515853
TU1735389 other downstream 1642684 10319310 ~ 10327138 (+) True G1516136

Expression Profile