RNA id: XM_036951784.1


Basic Information

Item Value
RNA id XM_036951784.1
length 6402
RNA type mRNA
GC content 0.53
exon number 18
gene id LOC118941092
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 10978682 ~ 11092554 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctcactcactcaaccagtGCCGCAGCCCTCCCTGTAAGCAGAGCaatgcaatgcagctactcacaGAAGCCCATCCATCCTCTTATATGTAGAtccccacctgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgcgttggtgcgcatgcgtgcgtgtgtgggagCGAGAACCTGCAACCGTTGGTTGCATACAAATGAATGCGCCACTACTGATGTAATTACGGCATTTGAACGCGGTGGGAGGGGTCAGAGAGACCGACATCTCTTTGCATTGTCACTAGGGCTCAAGGCACAGTGCGCAAGGGATTTATTTATACGGTTCATTTGCCACGAACAGgACTCCGAGCCTCCTCCCTTACCCAAATCATTGCAGACAAAATCGCAGAAAGATAGCTGCCCCATCTCGCCAGGTaagGTGTAACCAGGAGGTTTTCCTCATCTGTCCTCTGATTCCTACCATTGTGTTCAGAAGTGGTTAAGTCCATCAGCAACTCATCAGTGTCTAGTTGTCATGGCAGACAGTCGGCAGCCCGAGGTGTCGGGCCCTCCCACTAACGGAGCCCAGGACCAGTCAGCTGCCCTCGCTGGCCACGGAGAGAACGGCTTCTCCTCTTACAGAGAGAACGGCTATCACGGAGGACACGCTGCCACAGCAGAGCAAGTGTCAGCCCGTATAGTTGAGAAGGTGACAGCAGAGGCGGTGGCAGTGCTCAAGCAGGAGCAGGACAAGCAGGACTCTACTAGGAGACTGTCCTCAGTGGAGGACTCTGCCAACCtgccaccctcccctcccccctctccgtcGGCAGAGCAGATCGGACCCATGGAGCAAAACCTGCCGGTGAACCCAGAGAAGCCTCGTTCCGACAATCCTGCCATGGCAGAGGAGCATCCACAGGGGGCACCCCCTCCGCAGAGCCCGGTGGCccccaccacagagagagaaacacccgAGGGAGCAGAGAGCACTGTGTCCATCGCTGAGTTCTCCACTGGTTCCCCCAAAAACAAATCTCTAACTGATCCTACCCCCACAGAACCCGAGAAAACGGTTCAGCCTTTAGTGGAACCAGAAAAGGGGCAAGGGACTGGAATTACCACTAGTGTGGTTCCTAAGATGGAATACCTTCCGGAGCCCAAGACCACCGCTGAGAAACAGCCCTCGGTTGAAGAGCTCGACTCAGTTCCTCTTTCAGTTGTATATGAGCCCCTGAAAGATTAcattgaggaagaggaggaaaatgATGCTTATGTTACACCCAGTAAGTCAGCAAACCTTCAGAGCGTTCGTGAGGAGAAAGAGATCACATCAGAGAAAACTGAGAAAAGAATGCTGAGTCTAGGACAATCGACCGCCAGGCCATTGTCATTTGAGACTGAGAAGATTGAAGAGACTCCTCAAAGTAATGTCAGTGATGGAGAAAACCCAGAGCAGGAGGCACACATATCTGCTGCAGATAGTCTAAAAGACAAGCAGAGTTCGGAAGGTAAGTCTGGAGTTGCTTCAAAAGATGAGTCAGGTATGACGGCCTACTTTGAGACCTCTACACAAAGGGATACTGAAAAACCAGGAGAACGTGGTGAGGGTTACTATGAGCTCAGTGCTGTCAGCCAGAAGAAGCCCTCAGAGGAGGTTCTGGAGGCCGATTCAGACATTAAAATAAGCGATTCAGCACCAGAACAGACAATGTCCAGTATAACGTTGATGAGTGACAGTGCCATGGACAAGCTAGAGGATCTCCCTAAGAGGAAGGATGTGTGTACTAGGCTGTCACCTGGCAAAttgtcattggaacacagaagtctTTCTCTGAATTTTGCTATTGGCTCAATGGGTCAAGCAGGAGAGCAAAACCAGTCGAAGCTCTCATCTCTTACAGAGGTCTCTTCCGGAAGCCTGGATGAAACCACAGGCTACCTTCCTGTAACCACCCCATTAGTAACATTAGAGAGACAGTTACTTCCTGTGACTCCAGAGATAgctctcccagtccctaccactgAAACCTCCACGGATCTACCTGAAGACACCACCGCTAAGACAATGTGTTCTCCTGAGTTGTCACTCTCACCCATGAAGCAACACTACACCCATTTGAATGACCCATCCAACGACCTTCCTGAGATGCTGGACCTAGCCGGTGTTAAGCCCAAACCCACCCTGGAGAAGAGGGAGCTGGACCAGCATAATAGAAGGAGGTCTGTCCCTGCCTGTCCATCTGCTGCTCTGGTGGGCAGTTCTCTGGCCAAGCTGGTGCTGGGGAACCAGCAGACGCCCAGGGtggtgggtggagaggagagCCAGCAGGAGGAGCGTGGTTACTGCGTGTTTAGTGAGTACTCTGGTCCCATGCCCTCGCCTGCCGATCTGCACAGCCCAGTGGGCTCCCCACACCAACGGTTCCCCACAGTGACTGAAGGGGACAGTGACGAGGAACTGGGAGCCATTGCGGAAGAGGGCGAGCAAAAGCTGGCACCGCAAAAAACAAACCAGGCAGAGGAATCGGTTGGAGGAACAGTTAAGCCAATTTCGGTGCTTGAAAGAGCTGTCACGGCAGGTGTCAAACCGGATCGTCTGAGGATCCCTGTGGCTCCATCCAAAGACAAACTGACAGAGTTCCGGCTGGAGAGCGGTCTTCCCGGGGACATCAAAACCCAAGCCATTCCTGAGGTAGAGTTGGAGCAGGACCTCTCCAGAGAAGCGTCCCCCATCCCACCAGACTTCGCATTTACTTTTGGCACTGAGGTGAAGGACACCAAGCTTTTTGCGACCTCTGAGGCTCCAGCAAAAAAGGCTGCCGCTGTGGAGGGAACCAGTAGAGTCAAAGTAGAGGTGGCGTCAGCAAGGATTGGGAAGAGTCAGAAGACTGGTCTTAAAAAGCCAGAGATGGAGAAAGTGGAGGAGACCTCAgacccagaccatcagactgctgttgAAGACTTACAGCCAAAGGATGTTcgaggactggagagagaaaagaaaaatgAACCCATGACATCATCACCTGAATCATTAGTGGAGATCATCAATGCGCAGGAGAAGAAGCGTGAAAGTGAACCAGAGATGTCAACAGTACCAGCGGAGGCTGTCGTTCCAAAAGAAGAGGCCAAGACCAAAGCTGAAGAAACATCACCAACACCCTCTAACGTGAGCACTGCAGATGTGGAGGAAGCCACAGAGCAACTAGAAGAGAAAAGTCCAGAGAAAAGTGTTTCTGGAAGTTCTCCAGTTATAGTCATACCTCAGGCACAagttgaggaagaggaggaggaagacgatATAGAAGTAGCTGAGGAAGTCTTGGAGGAAGTTGAAGGCCCTCCTGTGCTCCTCaaggagaaagagcaagagagtcACCCTATGGAGAAGCAGGAGGAGGTGGCAGAAGAGGTGAGGGTGGTGGGTGGGGCGGAGGAGGTGATTGTTGAAAATACTAAAGATTTGGAGTCTGCTGTTGCTGGGGATGATGAATCATGTGATGCTACTGCCCCAACCATTGATGAAGGGGATTATGCCGATCGCATCTCTCATCTATCTGCCTGCTCTGGAAACGACCAGCCACAAACCCTAGATGGaaaggaggcagagaaagagaataATAAAGTGGAGGATAAAGAAGGGGTGGTGctgcaggaagaggaggagtccGCTGAAGTGGGGCAGGAAGTTGAGATGAAGGCTTCCAGTCGCGAGGAGACGGAGACCTCAGACGTACTGCGGAGCCAGACCAGCGAGACCACCGCTCTCGATGAGACCACCATGGACGTCTCCATGTTAGACAGCGAGAGTGGCTGGGTGGACTCACAAGATGATGACAGAAGTGTAATGACAGAGCAGATTGAAGCTCTGCCCAAAACACAGAGTCCTGTCAAGACTCCCCTGGTAGAGAGACCCTCTAATAAACGTCCCCCCGGCAGAGGACAGGGGCGCACCTCCACCCCCGAGCGCAAACTCAACCGCAGAGAGCCCGTCAGTCGTCGTCcaaaggaggaagagaagaagaaaaaagCGGGGACGAAGAGAACTGAACAGTGTAAGGTATCAGTCCTCCAGTGTCGCTCTCCCACTCGGAGGATTGTAGTCAAAGCTGCTACGTTCAGACAAGCTAGACCTGCTTCGCACCACGGCTCTGCTAGACGCAAGCCACCAGCCGCGGAGGACCAGCAGCCTCTTAATGTGACCCACCAATCCCGGGAAAGGACCTCTGAGGGTACCTACCGGACTCCAGAAAAGAGGTCCTCTCTGCCCAGGCCTGCCTCCTCCCTGCCCCGCCGTGCCCCCCCAGCAGAGCACGACAACACCAGCCCTGCCCCCCGCAGGCCCACCTCAATTCAAACTGAGCCCAGAGGGGAGCACAGGTCTGGGAGGTCCCCTAGTATCGCAGTCGGCACAAACTCGTCGGCCCGTTCCCGTTCGGCTCGTAGCGGAGCCTCCACGCCTCACACCCCCGGCTCCACAGCGGTCACCCCAGGAACACCACCCAGCTACTCCTGCCGCACCCCTGGGAGTCGCACCCCCGGCAGCCACACACCCAAGTCTCTCAGCCTCCTCACTCAGGAGAAGAAGTTTGCTGTGATCCGCACACCGCCCAAGTCGCCCTCCACCACGCCCAAGCAGCTGCGCGTCCTCAACCAGCCCCTGCCTGACCTGAAGAACATCAAGTCCAAGATCGGCTCCACAGACAACATGAAGTACCAGCCCAAAGGAGGACAGGTCTTCATTCCAAGTGTTAAACTGGACTTTAGCCATGTCCAATCTAAGTGTGGCTCCCTGGACAAAATCCAGTACGCACCCACCGGGGGAAACGTCCACATTACCACCAAGAAGATAGACCTGAGCCACATCACCTCCAAATGTGGATCAATGTCCAACATCCGTCACCGACCAGGGGGTGGTAACGTGCGCATTGAGAGTGTGAAGCTGGACTTCAAGGACAAGGCCGAGGCCAAAGTGGGCTCACTGGCCAACGCCAGTCACACCCCCGGGGGAGGACAAATCATGaTCGAGAGCCACAAGCTGACGTTCCGTGACACGGCCAAGGCTCGCGTGGACCACGGGGCAGACGTTATCACCCTGTCCCCAGGTGGCACCGGGGGTACATCCCCCCACCGTCTCAGCAACGTGTCTTCCACGGGTAGCCTCAACCTCCTGGACTGCCCCCAGCTGTCCACACTGGCCCAGGACGTCACCATGGCCCTGGCCAAGCAAGGCTTATGAGCATCCTGCCTCCATCGCCCCCTGGTTCCCGGTCCTCCATCGCCCCCTGGTTCCTGGTCCTCCATCTCCGCCTGGTTCCTggtcctccatctccccctggtacctggtcctccatctctccctggttcctggtcctccatctccccctggtTCCTGGTCCTCCATCGCCCCTCGGACCTCCTGGATCCCTTGGACCTGGTCTTAACATCCCCCCTTCAACATTTCTCCGTCGGCCCTCCACTGCAACAACCCTTCGCCGTTGTCCCCCAAGATAAGAAACCAGATGACTCAGAGTATCAGAGTCCATCTTCCATCATTCCACTCCCCCTCTCGCTCCTCCATAGGAAAACATGCTATTTAAactaccaccaccagggggaTTTTAATGACTGACTCTAGGATGTTTGTTCTTCTTCTTTCTGTTCTAAGGGATGTGCTCGACTCTGCtagggtgtgttgtgttgttcttTTGGCTTCTTTTCATTACATGTTGAACTTTCTTTGGGACATTACTGTAGATGACCAGTGTGCTAGCTAGGCATTGAAACAGGTACAGGGATAGTGTTGATAGGGTATTATCGGTTATCAAAGACTTTACAGTGATTCTTATTGTGTGGCAATGATCTCAAAGACATTCCATTTGGCCTAGGATATTAAGCGGTCCAGCCTGGTTTCATTCccaacatacactatatatacaaaagtatgtggacaccccttcaagttagtggattcggctatttcagccacacccgttgctgacaggtgtataaaatttagcacacagccatgcaatctccatagacaaacattggcagtagaattgccttactgaagagcttagtggcttataacatggcaccatcataggatgccacctttccaacaagtcagtttttcacatttctgccctgccagAGCTGCCCCGGGCAATTGTAAgcgctgttattgtaaagtggaaacgtctaggagcaacaacgtctcagctgcgaagtggtagaccacacaagcgcacagaacgggaccaccaagtGTTGAAGAGCGTAGTGTGTAAACAtctgtctgtcctcggttgcaacactcactactgagttccaaactttCTCAAggagcaacatcagcacaagaactgttcgtcgggggcttcatgaaatgggtttccatggccgagcaaccgcacacaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1735971 lncRNA upstream 16638 10963120 ~ 10964040 (+) True LOC118941091
TU1735949 lncRNA upstream 55598 10923624 ~ 10925080 (+) True G1516596
TU1735950 lncRNA upstream 55725 10924079 ~ 10924953 (+) True G1516597
TU1735941 lncRNA upstream 72180 10908275 ~ 10908498 (+) True G1516589
TU1735922 lncRNA upstream 94222 10886242 ~ 10886456 (+) True G1516574
TU1736041 lncRNA downstream 101693 11192322 ~ 11194769 (+) True G1516683
TU1735963 lncRNA downstream 122936 11213565 ~ 11214979 (+) True LOC110527285
TU1736053 lncRNA downstream 125629 11216258 ~ 11216756 (+) True G1516694
TU1736052 lncRNA downstream 131036 11221665 ~ 11222237 (+) True G1516693
TU1736064 lncRNA downstream 139091 11229720 ~ 11231308 (+) True G1516699
XM_036951793.1 mRNA upstream 1279 10973828 ~ 10979399 (+) True LOC110527282
XM_036951781.1 mRNA upstream 13199 10960744 ~ 10967479 (+) False LOC118936256
XM_036951782.1 mRNA upstream 13208 10961071 ~ 10967470 (+) True LOC118936256
XR_005037369.1 mRNA upstream 15012 10961785 ~ 10965666 (+) False LOC118941091
XM_036951780.1 mRNA upstream 23849 10944537 ~ 10956829 (+) True LOC110527277
XM_036951795.1 mRNA downstream 2957 11093586 ~ 11189284 (+) True LOC110514120
XR_005037371.1 mRNA downstream 122884 11213513 ~ 11214997 (+) False LOC110527285
XM_036951827.1 mRNA downstream 271982 11362611 ~ 11414702 (+) False LOC110495609
XM_036951823.1 mRNA downstream 271982 11362611 ~ 11420903 (+) False LOC110495609
XM_036951824.1 mRNA downstream 271982 11362611 ~ 11420903 (+) False LOC110495609
TU1735389 other upstream 653540 10319310 ~ 10327138 (+) True G1516136
TU1735043 other upstream 808722 10170102 ~ 10171956 (+) True G1515853
TU1734946 other upstream 1005372 9974528 ~ 9975306 (+) True G1515776
TU1733898 other upstream 1977552 9000398 ~ 9003126 (+) True G1515005
TU1732757 other upstream 2300468 8678448 ~ 8680210 (+) True LOC110495395
TU1736485 other downstream 542438 11633067 ~ 11634979 (+) True G1517015
TU1736489 other downstream 552160 11642789 ~ 11643758 (+) True G1517019
TU1736637 other downstream 849433 11940062 ~ 11941105 (+) False G1517150
TU1736988 other downstream 1743022 12833651 ~ 12872163 (+) True G1517414
TU1737033 other downstream 1844025 12934654 ~ 12936278 (+) True G1517456

Expression Profile