RNA id: TU1735963


Basic Information

Item Value
RNA id TU1735963
length 1138
lncRNA type sense_over
GC content 0.43
exon number 4
gene id LOC110527285
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 11213513 ~ 11214997 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaacacaaggacaaatctacattggagttgcttactaagaagCCAGTGATTGTTCCTGAGTGgcaattttgacttaaatctatggaaagacctgAATATTTGTCAAGCAATAATCAACAACTAATTTAACAGAAGTTTGAAAAGAATAATAGGttaatgttgcacaatccaggtgtggaatcttagacttacccagaaagactcagctgtaatTGATGCCAAAGGTGACTCTATGTGTTGACTTgtgggggttgaatacttatctaatcaacaGATGCATGTGATTTGTCAGGTGAATGGTGTCGCctgttgacaaaaaatgacacATCTTTTTGAATCCGTTCTGCGTAAAGTTAAGGGGTGCGACTACTTTCTGAGGGCACTCTAGAGCCATCACTTGTGTTCATGGTTGTCACACTCACTGCTTGGTTCAGGGACCTCATATCATCTGCTACAGGGCTCTTTGCAGCGAGAATGTGCACCACTGCAACGTGACCACCTTTTGGTGTAAAGTGTGCTTGATTTGACCCTCTGTAGGAATGGAACGCAGATTGACTTCCTGGCTGTGGATGAGAACTTTGTGATGCAGGGGTTCATCAACCTGGAGACCATTAAGACCATCAAACCAGGTGATGAGATTGTGGTGGAGTGCACCTATAACACAGCCACTCGCAAAGGAATCACGCAGTTGGGGCTGGCCACCACTGATGAGATGTCTCTGGCCTTTATCATCTACTACCCAGccagtaaatgagaacttgttctcaactagtctaccagAGGTATTGTGGAGATGTTGAAGACTAAAGCTTGGGACCAGGCGTCCATTGCTGAGCATGAGGCCACAATGAAGAAGGTCCCTCAGATTGGTTTAATCAGCAACGAACATAGTAACTACACCATATATGAGGGAAGCATCCTCAACATGATGGCTAGCCCTTCCGTGAGTTGCAGGAGTGATCCAACAGGCCTGGGTCTGTGAAGAGTTAATTGGCAACAATAGCTTCTGGTTCAGAAGGCTGAATGTTTTCAAAATGTGTCTCCCATGCAATAGTAGAAAGTGTCAACTGTTTATTCAtgatgtataaaaaataaatccaTTCAGACACCTTCCTATGATTTATGTTAAATGTCTTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1736041 lncRNA upstream 18796 11192322 ~ 11194769 (+) True G1516683
TU1736016 lncRNA upstream 133743 11079046 ~ 11079822 (+) True G1516660
TU1735995 lncRNA upstream 193279 11019869 ~ 11020286 (+) True G1516640
TU1735994 lncRNA upstream 195074 11017565 ~ 11018491 (+) True G1516639
TU1735993 lncRNA upstream 196162 11017189 ~ 11017403 (+) True G1516638
TU1736053 lncRNA downstream 1279 11216258 ~ 11216756 (+) True G1516694
TU1736052 lncRNA downstream 6686 11221665 ~ 11222237 (+) True G1516693
TU1736064 lncRNA downstream 14741 11229720 ~ 11231308 (+) True G1516699
TU1736068 lncRNA downstream 24282 11239261 ~ 11239673 (+) True G1516702
TU1736292 lncRNA downstream 93251 11308230 ~ 11309024 (+) True G1516862
XM_036951795.1 mRNA upstream 24281 11093586 ~ 11189284 (+) True LOC110514120
XM_036951784.1 mRNA upstream 122936 10980678 ~ 11090629 (+) False LOC118941092
XM_036951827.1 mRNA downstream 147632 11362611 ~ 11414702 (+) False LOC110495609
XM_036951823.1 mRNA downstream 147632 11362611 ~ 11420903 (+) False LOC110495609
XM_036951824.1 mRNA downstream 147632 11362611 ~ 11420903 (+) False LOC110495609
XM_036951826.1 mRNA downstream 147632 11362611 ~ 11420903 (+) False LOC110495609
XM_036951825.1 mRNA downstream 150680 11365659 ~ 11420903 (+) True LOC110495609
TU1735957 other upstream 121011 11086085 ~ 11092554 (+) True LOC118941092
TU1735992 other upstream 196476 11016765 ~ 11017089 (+) True G1516637
TU1735389 other upstream 886427 10319310 ~ 10327138 (+) True G1516136
TU1735043 other upstream 1041609 10170102 ~ 10171956 (+) True G1515853
TU1734946 other upstream 1238259 9974528 ~ 9975306 (+) True G1515776
TU1736485 other downstream 418088 11633067 ~ 11634979 (+) True G1517015
TU1736489 other downstream 427810 11642789 ~ 11643758 (+) True G1517019
TU1736637 other downstream 725083 11940062 ~ 11941105 (+) False G1517150
TU1736988 other downstream 1618672 12833651 ~ 12872163 (+) True G1517414
TU1737033 other downstream 1719675 12934654 ~ 12936278 (+) True G1517456

Expression Profile