RNA id: XM_036951825.1


Basic Information

Item Value
RNA id XM_036951825.1
length 3579
RNA type mRNA
GC content 0.50
exon number 19
gene id LOC110495609
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 11362611 ~ 11420903 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTCTGGCGCGCACACAGCAAGAAAGCAAACACGCTTCAGTCGATGGGAAGCGCATAACTTTTTTGGCGAAGtctttaaattgaaaaataggTATAGTATGGCATCTTCAGTGAGATTTTATTAATTAAAAATCTAAAATGATTCGTGTTTAAAATTATAATCTTATTCTGTGTTATTTGAGAGTGTGACGATATTTTCCCACATCAAATGCGATGTTATTGGCTCCTGTTTTGTGTGATAGAGATTTGAACCTTGTCTCCAAAGCACCTGTCTGACCCATGTTTTGACTGCCGAACGGTTTCGGAGTCTGAACATCCCAAGGATGGAACCGATCTAGAACAGCGGTGTTTCCCCTAGAATAACGTAAATATAGCTATTATCATTAAATACCCATTTTTTTAATTTGGAAATTAAAGTGAGATGTTTTCAATTTTATCAGATGCGTAATTTTTTATTTACAAGttattattttcaataacggcctaggaacattgggttaacggccttgttcagaggaagaacgacagatttttaccttgtcaactcggggattcgattttacaacctttcggtttctagtacgttttaaccactaggctacctgccgcccaatgcAATGCTTGTGCATTAACCTTAGGTTACCTTAGGTTAGCCTTATAGTGCATCAAGAAAAACGGAACTCACAATTCTATTGGAAACATAGCTCGTGGAATTACACTCAAGAATGTCACACAGCTCCTACACCAGGATGTGGGTCCAGGCCCATGGAGCCTTGGAGGACCTTCTGGTGGATGAGCACCCTCCCACTGCCCCTCGGCCGCTGAAGGACCGGCTGCAGGTCTTCCAGGGCCTGGCCACCTTCTACCTGAAGTACCTGCAGATCTTCCGCAGCCTGGAGGCTGTCTACGACCAGATAGTTCACCCCCAGAAGAGACGCATGGTCAGGCACGTGTTGGACGGCGTGATGGGTAGAATCCTGGAGCTCAAGAACGAGATGGTGGAGCTGGAGTTCTCAGAGTTCCACTACTTTGATGATGTGCTGCAGGACCTCAAGCTGACACCTGAGGACCTGGAGGTGCCCATCCCTCAGTATTTTGTGAGAGAGAAGATGCGTGTGCTGCGGGACAGACAGAAGATGCTGGCTCATGTCATGGCTAAAGGGGGACACATTGAACAGGTTGAGCAGGAGGTGTCGGTTCAGACCATGTGTCTGGAGGAAGCTGTTCGGGTCCTTCAGGTTTGTGAGCGGGCACGGCAGGGTCGGCTCAGGCATCGCTTCATGAAGGAGATACGGCAGGCTGAGGAAGAAGGGAGCCAGGCCAAGAGCCAAACACCCATCAGCACCCTGGACCCCGACCAGGCTGCCACATGCATTCAGAAGGTTTGGCGGGGCTACAGTCAGAGGAAGAGGACCAGGAGAGAACGGCTGGAGGAGATGATATTTCTGGGAATGGTCCCtccagagcagcagcagcagaggccCAGCGTGGCCCAGCTGAAGGCCCAGCAGGTGGAGACGACTCGCAGGCTGGTCCAAGAGGAGAATGAGGCTGAGTACCAGAGGGCCCTGGTCAGCATCAAGGAGTCTGTGCGTGCCGTGGACGGCCCTGACCTACGGGAAACCCTGCAGGAGCAGATCAGACAGTGGTTTATCGAGTGCCGAGATGCCACTGGAAAGTTTCCTGACTTCCCCAATGCTGAGGATGGGGGATCAACAGCCATATTTGCACAGAAGACACCTGACCAGGTCGCTGCAGAATTAGCAgcgaaagaggaagagaagaagaggaaagaCAACATAAATAAAGATAAGAAGGGTGGGAAGGACCGCAAGGATCAGAAGAAAGACAAGAAGCGGAGAAGCAAACAGAAGAAAGGAGGAAAAGAAGAAGGAGAGgaggaggagaagggctgGAAAATGCCCCCGAGCAACTTCCTCCCTACTGTTGTGGAGGGAAACAAAATGTACAAAGacgtgTGGCAGGGGCGTGATGAAACACAGAACTTCCTGCAGCGGTTTGATGCCCAGCTGGTGCGTGAGGAGAAGAggttggaggtggaggaggaggtcagagtTCAGGTCGATGAGCTGATGAGACAGGAAGTGAAGAATCTCAAGCTGGCTGTGGACcgagagaaagggaagaagaagaagaagggaaaGAAAGGTGGCAAGAAGAAAAAGAAGAAAGGAAAGAAGGGcagtaagaagaagaagaagaaagagaaggatctGACTGCTGACAGaacccTTGAGTCTCTGTATGAAGAGCTGGTGCTGGAAGGCTTCTTGATTAGACCCTTGAACATCAAGCTCTCTGAGTACATTGgtgaGTTCAGCTACCTGGGTACGACCCTGCGCCAGGCAGACATTGAGCCCATGCCCTCTCTGTCAGACGTCAGACAGCTCATTGCCCTTTATGGGATCCTGCCTctgggatCCCAGTCCGTCCATCAGAAGGCTCCCCTGATGAAGACTCTGCTGCTGGCTGGTCCTGGAGGCGTAGGGAAGAGGATGCTGGTCCATGCTCTGTGCACTGAGACCGGGGCCAACCTCTTCAACCTGTCCCCCAGAAACCTGGCTGGGAAGTACCCCGGCAGGAGCTGCCTCCAGTACCTACTGCACATGGTCTTCAAGGTGGCTCGCCAGCTGCAGCCCTCTGTAATATGGATCGGAGATGCAGAGAAAACCTTTTATAAGAAAGTCCCGAAGCTGGAGAAAGAGatgGAGCCTAAGCGTCTGAAGAAGGACCTAGTCAAGGTGCTGAAGTCTGTGAAGCCTGAGGATCGTGTTCTGGTCGTAGGGACGTCCCGGAGGCCCTTTGACGCAGACCTCAAGCCCTTCTGTAAAGTCTATAGGAAGATCATCCTCATCCCCAGACCTGACTATGCCTCCAGACTGGTGCTGTGGAGGGAGCTGCTGTGTGGCGGCGGTGCTCGCCTCACCCCCAACCTGGACCTGAGCTCCCTGGCCAAGGTGACAGATGGCTACACCCAGGGCCACATCCTGCAGGCTGTGAGGCAGGTGCTGACCCCTCGCAGGCTGGCCCAGCAGACTACCAGACCACTGACCGCTGAAGAGTTCATCCCTCCACTGGCCAGACAGGACCCCGTctacaaagaggaggaggaggcctttAAGATGTGGTACGGCAGGACACCTTTGGGTAAGAAGAGGGCACGGGCGGCCAAGGCCATCGAGGAGGAGGGAGAGTCGGGCAAGGACAAAGACAAGCGGGGCACTGGGAGGAAGACAGGGAAAGAAGAGAAAAGCAAGAAGAacaataagtaaatgtcaaagaCAAGAGACAGAAGTCGTCAACATTGGAGAGGTCTACAGACAGGGACTTTCAGGGGATGTGATTTACATTCCTACTTCTTAGATATGATGGACGATACATTTACTACCAGTCTATGACTGTAAATGTCATGACAACAGTATAACGGTAACAGTCGATCGTGTTATGATCATAATGACAAAAGTAGCTGTTTATCTTGTATGagaccagatataaagtatgtcaAATAAATCATTATTATCGCAGTGTAAATATTGAAGATAAGTGTTGTTGATTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1736357 lncRNA upstream 11214 11353449 ~ 11354445 (+) False G1516911
TU1736343 lncRNA upstream 24309 11340388 ~ 11341350 (+) True G1516899
TU1736334 lncRNA upstream 26203 11336239 ~ 11339456 (+) True G1516891
TU1736305 lncRNA upstream 44983 11320428 ~ 11320676 (+) True G1516875
TU1736292 lncRNA upstream 56635 11308230 ~ 11309024 (+) True G1516862
TU1736422 lncRNA downstream 92186 11513089 ~ 11513328 (+) False G1516960
TU1736423 lncRNA downstream 92186 11513089 ~ 11513506 (+) True G1516960
TU1736424 lncRNA downstream 92934 11513837 ~ 11515942 (+) False G1516961
TU1736429 lncRNA downstream 92934 11513837 ~ 11515171 (+) True G1516961
TU1736445 lncRNA downstream 127495 11548398 ~ 11548669 (+) True G1516975
XR_005037371.1 mRNA upstream 150662 11213513 ~ 11214997 (+) False LOC110527285
XM_036951795.1 mRNA upstream 176375 11093586 ~ 11189284 (+) True LOC110514120
XM_036951786.1 mRNA upstream 275030 10980678 ~ 11090629 (+) False LOC118941092
XM_036951829.1 mRNA downstream 32111 11453014 ~ 11456879 (+) True LOC110528750
XM_036951409.1 mRNA downstream 328826 11749729 ~ 11759288 (+) True LOC110495615
XM_021570956.2 mRNA downstream 345460 11766363 ~ 11772739 (+) False LOC110495622
XM_036951844.1 mRNA downstream 345461 11766364 ~ 11772739 (+) False LOC110495622
XM_036951843.1 mRNA downstream 345463 11766366 ~ 11772739 (+) True LOC110495622
TU1735957 other upstream 273105 11086085 ~ 11092554 (+) True LOC118941092
TU1735992 other upstream 348570 11016765 ~ 11017089 (+) True G1516637
TU1735389 other upstream 1038521 10319310 ~ 10327138 (+) True G1516136
TU1735043 other upstream 1193703 10170102 ~ 10171956 (+) True G1515853
TU1734946 other upstream 1390353 9974528 ~ 9975306 (+) True G1515776
TU1736485 other downstream 212164 11633067 ~ 11634979 (+) True G1517015
TU1736489 other downstream 221886 11642789 ~ 11643758 (+) True G1517019
TU1736637 other downstream 519159 11940062 ~ 11941105 (+) False G1517150
TU1736988 other downstream 1412748 12833651 ~ 12872163 (+) True G1517414
TU1737033 other downstream 1513751 12934654 ~ 12936278 (+) True G1517456

Expression Profile