RNA id: XM_036951829.1


Basic Information

Item Value
RNA id XM_036951829.1
length 2426
RNA type mRNA
GC content 0.47
exon number 2
gene id LOC110528750
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 11453014 ~ 11456879 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAAACTCCATGCTTAACATCTGGATGTTGTAGAACGGAGTAGCATCACTCTACTCTCTAGAGTGAGTTAGACAGACGTGCGGAAACCGAGTATCATCGAATATAAGATTGTTGTTGTCAAATGGTCAGAACGTCAGCTACAACTCGAGGATATTGATTGGCACTTGGAATGGGCTTTGGCTCCCGCTATCGGAGCGCAAGGTAAACCAAAAGGGGCCACATGAGTTCTGCTATATTCGGAAACCACCACGGCTCCAAATTGACTGCTAATTCTGTTGATCTGGACACATCTCCACTCTCCAGTATCGTGTGTCGACCATCTGCAATGTTGATGGAATGGTTTTATTTAATCGCGAGAAACGAACAAATAATCACGGGATTACCAAAACGTCGACATTTCTAAGGTCGGTTGTCTGTCGAATAACAACGTTGTGAAGTTGGTGACTTCCGAACCCAAGGAAGACTGCAGGTGTCATCGCTCCCTTCCATTTCTCCAGTAACATTTCCTTGATTGACATTCCTTCCATCAGATCATATGAGTGCAGCGTTCAGCCCTTCGTTTATGATGATGCAGCGCCCACTGGGAAGCACCACTGCCTTCAGTATCGACTCTCTGATCGGCGGTCCCCCTCAGCCCAGCCCGGGACACTTCGTCTACACCGGTTACCCCATGTTCATGCCGTACCGGTCAGTGGTGCTCCCACCGCACCCTCCGCCGCCCCCTGCCCTACCCCAGTCCGCCCTGCAGCAGGGGCTCTCGGCTACCCATCCGCACCACCAGATCCCCAGCCTCCAGAACTCTTTCTGCTCTAGCCTGGCTCAGGGCATGGCGCTCACCTCCACCCTGATGGCCAGCCTGCCTGGAGGGTTCTCGGCTTCACAGCAGCACCAGGAGGCGGCGAGGAAGTTCGGCTCGCAGTCTCTCCACGCCGCCTTCAATAAATCTCAGGACATTCGTTTGGATGGGGATGACGGAAAGACATTTCTAGGAAAGGAGTCCGCAACGCTCCCCTCCTACCACGACTCAGAGCCATTGCAgtcatccacagCCAGAACCCACGGCAAAGAAGACCCGAAAGAGGACGAATGCAATAGAAGAGATGAGAGCTTCTCAATGGACAGCGATTTAGACTACAGCTCCGACGACAACATGACGGGTAACTCGATGTGTCAGAAAGATGATGGGGAGGGTAACGTGGATGAGGGCGTCCACGGGTCCAACGGCACTGGCAGCACCACGTCTACCGGTAAGAACCGGCGGCGGAGAACGGCGTTCACGAGCGAGCAGCTCTTGGAACTGGAGAAGGAGTTCCATTGTAAGAAATACCTGTCTTTAACGGAACGCTCTCAGATTGCGCATGCCTTGAAACTCAGCGAAGTTCAAGTCAAGATCTGGTTCCAGAACCGGAGGGCCAAGTGGAAGCGCGTAAAGGCTGGTAACGTCAATTCCAAAACCGGCGAGCCCTCTAGGAACCCTAAAATCGTGGTGCCTATCCCCGTGCACGTCAGCCGGTTTGCAATAAGGAGTCAGCACCAACAGTTAGAGCAAGCCAGACCATAACATTTCTTTATGTTAAACCGATGGACGAAATACAGATTAAGTTAATAACACTGTTTAAAAACAGAAAAACAGCACACACGTTATTTTGGAATTGGACTATTGATAATCACAAACCAAGTTTATCCTTTGGTGAGTCTTTGTAAATCTTTGTAAGACAGAGGAGAGCAAATGAATTGATGGTACATTGCTTTTCCTCTGCATTACTGCTGAATCGATCCACTGATGGTAAACTGATTAAATACCAAGACAAAAAAACTCGAAATGGTGACATGTATCACCTTGGTTACTAGTGTAAATACCGAGATGGGCCATAACTATAACCGCCATGGGACCAAATTGAGGACATTACAACAAGACAACAATACATCCAATTGTACATTTCCGAGATGTTGATTAAAAAGATAACCTACTTTTACGTCTGTTAGATTTTCTTTGAGGTTTGTGCTGCCGATTCTGAAGGACCTTGCTTGTATTATTGTTGTTTTTGCAGCAGGCGCAAATCAGATCAGAATGAACAGCTTTGTCCCAAAAGGAGCACTTTTATCATTTCTAATTTTATCCCCCCAAACCAGTACACATATTGTACACATAGCCTACAAATATGCTCAGACATCTCAACCATCAATCATCTCCTCCAAAAAGCAAAGAGTGGCCCTGTAAAACCATCCTACTTCTGTTCTCAGTTTGAGTTTGTTTCCATTGTTTCATTCCATGGTTGCTTGAATGATTTTTCTTCATTGTGACTTTTTCAACAGTCAAGGAGCACGCTGCTAATTTATTTAATATTGTGCAAAAAGTAACTAACATTACATTACTTATTGAGTAAATAATAAAGTGTGCATTAAAGATGAACCATTAGCAATTGT

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0030902 hindbrain development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09321 GBX; homeobox protein GBX

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1736359 lncRNA upstream 63884 11353547 ~ 11389130 (+) True G1516911
TU1736357 lncRNA upstream 98569 11353449 ~ 11354445 (+) False G1516911
TU1736343 lncRNA upstream 111664 11340388 ~ 11341350 (+) True G1516899
TU1736334 lncRNA upstream 113558 11336239 ~ 11339456 (+) True G1516891
TU1736305 lncRNA upstream 132338 11320428 ~ 11320676 (+) True G1516875
TU1736422 lncRNA downstream 56210 11513089 ~ 11513328 (+) False G1516960
TU1736423 lncRNA downstream 56210 11513089 ~ 11513506 (+) True G1516960
TU1736424 lncRNA downstream 56958 11513837 ~ 11515942 (+) False G1516961
TU1736429 lncRNA downstream 56958 11513837 ~ 11515171 (+) True G1516961
TU1736445 lncRNA downstream 91519 11548398 ~ 11548669 (+) True G1516975
XM_036951823.1 mRNA upstream 32111 11362611 ~ 11420903 (+) False LOC110495609
XM_036951824.1 mRNA upstream 32111 11362611 ~ 11420903 (+) False LOC110495609
XM_036951826.1 mRNA upstream 32111 11362611 ~ 11420903 (+) False LOC110495609
XM_036951825.1 mRNA upstream 32111 11365659 ~ 11420903 (+) True LOC110495609
XM_036951827.1 mRNA upstream 38312 11362611 ~ 11414702 (+) False LOC110495609
XM_036951409.1 mRNA downstream 292850 11749729 ~ 11759288 (+) True LOC110495615
XM_021570956.2 mRNA downstream 309484 11766363 ~ 11772739 (+) False LOC110495622
XM_036951844.1 mRNA downstream 309485 11766364 ~ 11772739 (+) False LOC110495622
XM_036951843.1 mRNA downstream 309487 11766366 ~ 11772739 (+) True LOC110495622
XM_036951842.1 mRNA downstream 316235 11773114 ~ 11779870 (+) True LOC110495619
TU1735957 other upstream 360460 11086085 ~ 11092554 (+) True LOC118941092
TU1735992 other upstream 435925 11016765 ~ 11017089 (+) True G1516637
TU1735389 other upstream 1125876 10319310 ~ 10327138 (+) True G1516136
TU1735043 other upstream 1281058 10170102 ~ 10171956 (+) True G1515853
TU1734946 other upstream 1477708 9974528 ~ 9975306 (+) True G1515776
TU1736485 other downstream 176188 11633067 ~ 11634979 (+) True G1517015
TU1736489 other downstream 185910 11642789 ~ 11643758 (+) True G1517019
TU1736637 other downstream 483183 11940062 ~ 11941105 (+) False G1517150
TU1736988 other downstream 1376772 12833651 ~ 12872163 (+) True G1517414
TU1737033 other downstream 1477775 12934654 ~ 12936278 (+) True G1517456

Expression Profile