RNA id: XM_036951409.1


Basic Information

Item Value
RNA id XM_036951409.1
length 4201
RNA type mRNA
GC content 0.48
exon number 8
gene id LOC110495615
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 11749729 ~ 11759288 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCACATAGCATTTCCTCGGGTAACTCGATGCGCTGGAAGGGGGAAGGCAGAAGATCCCTCCTTGCCGACAACGCATTGAGACTTCCAGAAATCTCTCCTTCTGAAGACGTTAGAAAGAGGAAAATGGCCTCTAAAGTTACAATCGATGGAGTAAGTTTTGTATAGACAGAATATATGGAACCGTTACGTGTAGCCGCCTAGTAAGCAGAGGTTGCACTGTCTACATTAACATAGAAAATGAAATGTATGTCATTTCAGCTGCAGAAACGGAGAAAGGAGGCATTGGACGACTGCCACAATATTTCTTATCATCGGGGAGTTATTTTTTTGTCGCCAGAATGGAATGGTAAATGGTGCATTTTCATGTAAACTTTCAGCAGGATTATAGCACACAAGTTGACAAGTGTTTGTGTTTACTTTATTGAAACAGCCCAGACTGTGCATTTGTCTTTCTGAACAGTTACGTCATAACCTACTGCGGAACTCTTTTCTTCTTCTCAAACAAAGCGTTTTTATGGACAATCACTGATCAGTTATTTCATCTGAAAACTGGACACAACGTCAGAAAGACGGAGGGCTACAGGCAATGCCTCTCTCACTGATCAGTTATTTCATCTGAAAACTGGACACAACGTCAGAAAGACGGAGGGCTACAGGCAATGCCTCTCTCACTGATCAGTTATTTCATCTGAAAACTGGACACAACGTCAGAAAGACGGAGGACTACAGGCAATGCCTCTCTCACTGATCAGTTATTTCATCTGAAAACTGGACACAACGTCAGAAAGACGGAGGACTACAGGCAATGCCTCTCTCACTGATCAGTCATTTCATCTGAAAACTGGACACAACGTCAGAAAGACGGAGGACTACAGGCAATGCCTCTCTCACTGATCTTCTTATACCCATTGTAGGTTTTTCTTTGACACTGCAGAAATGAAACAGACACtgcatctctgtgtgttatggctgttgCTGGTATGGAGCACAGGGGCCTCTGACAGGAGACCCCTCAAAAGGACAATCTTACGACGAACATCCCTCCAGGGGGGGATTTTTAACAGAACACAAAATGTGCTGAACTCTGACAGTATTGCTCCTTCCGCTGGTGGTATAAATGTATCCACTGTGACGAGCCATCGTGACAGAATGCAGAGAGATGAGAAAGCTGAGCCTCCAAGGAGAAGGATGATGCCAAGCAGAAGAATACCCCAACAACCAAAGAAACCCATAAACCAGGTTGGCAGTGGCACATCTCAAGACAACAGTAAACAAGTGACAGGGGAGGCGGTTCAGCCTCAGTCCACACCAGCCCGCACCGTCCCCGGCAGCGCAGGCTCCCTCAACGTCCTGGCCAGCTTCGCAGGGAAGAACCGGGTCCTGGTCATCTCCGCCCCACATGACTCAGACGGTTACTATCGCCTGATGATGACCCTCCTCAAGTCGGACGTCTACTGCCAGATGGCGGAGCGGCACATGCAGATGATAGTGATGTTCCAccaggagggagagcgaggcggGAAGGTGCGGCGGGTCAACGCCAAGGGACAGGTGACGGAGGAGCCCCTGGACACGGTCCTCATCCCCAGGCTGATGAACTTCCTGAAGCTGGAGGAGGGGAAGTTTGGCATGGTTCTCCTGAGGAAGACTCTCCAGGTGGAGGAGAGGTACCCGTACCCGGTCAGGCTGGAGGCTATGTACGAGGTGATGGACCAGACCCACATGCGCAAGCTGGAGAAGGCCAGGCAGAGGGGCTTCGTGCAGAGGTGCAAGGCGGCCGGTGTTGAGGGCCAGGTGGTTGAGTCTCAGGGCCAGGGGGTATTGACCACGGGGTCAGAGGTCACAGTGAACTCTACAGTGGAGAGGGTGCCAGTGAGGAAAGGGGTGCAGAGACCAGCTCAAGGACCAAAGGCTGTGACAGTTACCACAACCCGACCAACCACAAAACCAACTATGACCACAAAGGCAACCACAATTACAACAAAGccaaccacaaccaccacaacaaaaccaacaagaacaaaaaaaaaaaaaactacaaccacaacaaaaccaccaccaacaacaaaagcaaccacaaccaccaccagaaAAACAACCACGACCACAACAaaaccaccaccaacaacaaaagCAACCACAACCATAACTACAGCAAAGccaaccacaaccaccaccagaaAAACAACCACGACCACAACAAAACCAACAACTACTACAACGACCACAAAAGTAACCACCACAACAAAACCAACAACCACAACAAAAACAACCACGACCACCACCACTATAAAACCAACCACCACAACAAAACCAAAAACTACAACAACACGAcgaaccacaaccaccacaacaccCACTGTTCCGAAGCCCTTGGACCCCCAGACAACACCGCACTGGGACCTAGAGGTCCCCACCACAGACAAATCCTTCTACATCCTCTCAGAGACCCACAAAAATGGCATAGATGACGTTACAGAGTCCCACAGAGACCAATATGAAGAAGACACAACCGACGATACCAAACATGGCCGACAAGTTGTTACCTCTCCAACTCAGCTCACTAACGACAAACCAACTGAAGGAGGGGAAGAGCTGGGCAGTGAACTTAAGGTTGACTCTGATGCACAGGTGGAAACAGCTTCCCCCAAGAAGAGTAAGGTCAAGCGGCCTGTCAATGCAGAGAGGAAGAAAAAGGCTGATAAATCAGGCAAAAAGAGTAAAACAGACAAGAAAAGGTTGAAGGCTACTAAAGACAGTGATGGAGGCTTCTATCGTGGCAGGAGACCAGGGAAGAAGGCCGCTATTAACCAGGAGAAAGAAGCAGACAACAAGAGGCCCCCCACAAAACAGCCAAACCTCTTAGTATCCTTTTTTGGTCATTTTGAGAAGAGACGACGTCTACTTGTGATCAGTACTCCAGACGAGGAGAATCCTATGTACACGCAGCAGAGagatgagtatctggagcatgtgTGTGAATTGGGCGTCAGAAAAATCTCTCTTATCACCATCTTTGGCTCTCTGACCAATGGCACCATGAAGATGGACCATTACCAGGCTGAGAAGGATCAGCCTCTGAAAGGCATGAAAGAAGAGGACTTCACAAACCAGCCCCTCATCAGAGCCTTGAGGAATGAGTTGGGACTGATATTTGACGACTACTATATGGTGCTGACTGACTTTGATATGAAAGTGAAGCAAGAATATGAGGTGCCCATCGCCATGACGGCTGTGTTTGACTACATAGACACATTCTCTTCTCGCATCAAGGAGATGGAACAGCAGAAGAGACAAGGAGTGGCGTGTAAGAAGGAAGACAAATCCAAATCTCTGGAGAACTTCCTCTCACGGTTCCGCTGGAGACGCAGGCTGTTTGTGATCTCCTCCTCTGACGACGAGGAATGGGCCTATCAGCAGCAGCTCTACGCCCTGACTAGCCAGGCCTGCAATCTGGGCCTGCGCCACTTGTCTGTGCTGAAGCTGATTGGAAAGGACATGGAGGATATGGGCGGGACCCTTGAGCTATACCCAATCAACGGGACTGCCACTGTGGAACGTGAGGAcgtttctccctctctggtgCAGGACATCAGGAACTACTTCCAGATCAGCCCAGAGTACTTCTCTATGCTGCTGGTGGGGAAAGACGGCAACGTCAAGTCCTGGTACCCGTCTCCCATGTGGTCCATGTCCATCATATATGACCTGGTTGACTCCATGCAGCTCCGCAGACAGGAGATGGCTATCCAGCAGTCCCTTGGCATGCGCTGTCCTGAGGATGAGTATGGGGGCTACGGTCATGACAGAGACCCGGATGGTTACCACCGTGGATATGGTTACTAAAGGATTGAGAATAGGATGTTCCCCTTAGGATGTGTTCGATTTTCTATTGAGGCCTGGTTGTGGCCTTCTCCCATGAACTATATGAAGCCATTGTATGAATGGCATTTCATGAAagctttttttttgcattttgatAACTGTGACGTTGTTTTATAAGAATGGACTTTTCTAAAATAGATTATGAAAATGTAGCATACTTTTTCTTCCATATATTTTTGAATGTGATTTGTTTCACAGGGAGAATGGAGATTTCAGATTAAAAACATTTGGCAATTGCCTTTTATGTTGTGCATATATTTGTTATCTTGTATGGAGATATACCGGTAACTgcccaaataaaggaaacacttgagtg

Function

GO:      GO:0005578

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1736484 lncRNA upstream 97450 11632537 ~ 11652279 (+) True G1517014
TU1736480 lncRNA upstream 124451 11624596 ~ 11625278 (+) True G1517010
TU1736472 lncRNA upstream 140886 11608248 ~ 11608843 (+) True G1517002
TU1736469 lncRNA upstream 152024 11597292 ~ 11597705 (+) True G1516999
TU1736468 lncRNA upstream 154718 11594662 ~ 11595011 (+) True G1516998
TU1736545 lncRNA downstream 58067 11817355 ~ 11820418 (+) True G1517065
TU1736577 lncRNA downstream 78056 11837344 ~ 11837614 (+) True G1517095
TU1736540 lncRNA downstream 79239 11838527 ~ 11841346 (+) True G1517060
TU1736583 lncRNA downstream 102084 11861372 ~ 11862045 (+) True G1517101
TU1736636 lncRNA downstream 180774 11940062 ~ 11941105 (+) False G1517150
XM_036951829.1 mRNA upstream 292850 11453014 ~ 11456879 (+) True LOC110528750
XM_036951823.1 mRNA upstream 328826 11362611 ~ 11420903 (+) False LOC110495609
XM_036951824.1 mRNA upstream 328826 11362611 ~ 11420903 (+) False LOC110495609
XM_036951826.1 mRNA upstream 328826 11362611 ~ 11420903 (+) False LOC110495609
XM_036951825.1 mRNA upstream 328826 11365659 ~ 11420903 (+) True LOC110495609
XM_021570956.2 mRNA downstream 7075 11766363 ~ 11772739 (+) False LOC110495622
XM_036951844.1 mRNA downstream 7076 11766364 ~ 11772739 (+) False LOC110495622
XM_036951843.1 mRNA downstream 7078 11766366 ~ 11772739 (+) True LOC110495622
XM_036951842.1 mRNA downstream 13826 11773114 ~ 11779870 (+) True LOC110495619
XM_036951383.1 mRNA downstream 32313 11791601 ~ 11802738 (+) True LOC118941042
TU1736489 other upstream 105971 11642789 ~ 11643758 (+) True G1517019
TU1736485 other upstream 114750 11633067 ~ 11634979 (+) True G1517015
TU1735957 other upstream 657175 11086085 ~ 11092554 (+) True LOC118941092
TU1735992 other upstream 732640 11016765 ~ 11017089 (+) True G1516637
TU1735389 other upstream 1422591 10319310 ~ 10327138 (+) True G1516136
TU1736637 other downstream 180774 11940062 ~ 11941105 (+) False G1517150
TU1736988 other downstream 1074363 12833651 ~ 12872163 (+) True G1517414
TU1737033 other downstream 1175366 12934654 ~ 12936278 (+) True G1517456
TU1737034 other downstream 1178235 12937523 ~ 12942494 (+) True G1517457
TU1737133 other downstream 1427813 13187101 ~ 13188080 (+) True G1517545

Expression Profile