RNA id: XM_036951843.1


Basic Information

Item Value
RNA id XM_036951843.1
length 2274
RNA type mRNA
GC content 0.43
exon number 12
gene id LOC110495622
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 11766363 ~ 11772739 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCAAATGACAAGTCATGTGATCTGTTGCTGACAAAAAAACAACTGAAACCGACGGTCTTTCGGCATTTGAAGACTCACACATCTGTCGGGGATCGATCTGATAGCTAACATGCAGAACGCCATTAATTCCGTAAAAGGCACGGCCCTTGGTGTAGCCGAGTTTTTTACTCCAGTGCTGAAGGAATCCAAATTCAAGGAGACAGGAGTTATCACTCCAGAAGAGTTTGTAGCTGCTGGAGATCACCTTGTTCATCACTGCCCCACATGGAAATGTAGTCCCAGATGTCACATCATGTTTATTCCATCCAGGGTGtctggggaagaggagaaggTGAAGCCGTATTTACCCAAGGATAAGCAGTTCCTATTGACTCGCAATGTTCCCTGCTACAAGCGCTGTAAACAGATGGAGTATTGTGATGAACTGGAAGCCATCATAGAGGAGGATGACGGAGATGGAGGATGGGTCGACACCTACCACAACTCAGGTATAGGGGGAGTTACAGAAGCTGTACGAGAAATCTCATTGGACAACAAGGACATGAACATGAATGTGAAGTCTGGTGCTTGTGGGAacggagatgatgatgatgatgatgaagacgaGGCAGCAGATATGGAAGAGTATGAGGAGAGTGGACTACTGGAAACAGATGAGGCCACCCTGGACACCAGTAAAATGGTGGACTTGTCTAAATCCAAAACGGGAGAAGCTGGGAGCGATGACATCCTGCAGACTCGAACCTATGACCTCTACATCACATATGACAAATACTATCAGACTCCTCGACTCTGGCTGTTTGGATACGATGAGGACAGACAGCCCCTGACAGTGGATCAGATGTATGAAGACATCAGCCAGGATCATGTGAAGAAAACCGTCACCATCGAAAATCACCCCCACCTACCACCCCCAGCCATGTGCTCCGTGCATCCCTGCAGACATGCTGAAGTGATGAAAAGGATCATTGAGACGGTggcagaagggggaggagagcTTGGAGTTCATATGTATCTGTTGATTTTCTTGAAGTTTGTCCAGGCCGTCATCCCCACGATAGAATACGACTACACAAGGCACTTCACCATGTAGCTCCATCCTACAGAGGTGTAGGCTACTCTTGCAAACATCTTTGAGTGTAGGAGGAATCTGTCTTCTGGCTGGCAGCGTTAGTGGGGTATGGAATGTTATCTCTGGGAATGACTCTTGGAATATTCTGGGTACTCTCACCCTCTTGGCGTGGGAATAGGTTCAATCGCTGAGGGGTTGATGGGTGTGTACAGATGTTGGTAATGCTGTAATCccaatgatgtaatggctttatgTGGTGACCGATCTCGCAGTGTTTTTGTCTGGAAGATTCTCACTCTGTACTTGGCAAATGCTCTGCCATTAACAACCATTCAAAGATAACTATATTTATTTTACATTAATTCACTGACAGACAGGCTTTCAAGTTTTCTCCATTTTGTTTTCATAACCACACCTTCTTTTTTTTACCATAGTAATGGTGCCACTAATGTCCTCTCAAATGTTACCAGTTAAATGTCGTTGAAAGAAATctaacaaatgttttgtccacATTATAGCTTTTTCAGTGTGATGCACTGTGCTGGACTAATGTTTGGACCTCTTTACTGTTTCAGACCCATGCCAGTTTGTCTTAATGGTAAAGTGTACATGGTCTTTTGGGCCCAGGACCATTGTTGGTTCCTGTAAGTGGGGTCGGTGTTTTCTTTGCCCAGCTCTtcttttttttcacatttctttTTTTGACCCTGTTCCTAGTTCCACTGTCTTGTCCTGTAGAGATGACGTCATGATTGTGTCGTATGAATATGTGAGCGTTACCATTTTGTGTGATGACGCGCAATGCTACCTGTATCACCAGATTATTCAAAGACACCGTATATCAGGAGTTTGACTGCGTCTTCTCTAATATAGAAAGATGTCAGTTCTGCACAGTGCATTAATTGTTAACTATAGTACTCTTCTCTTAACAGTATGTATAACTCACTCATTAATGCTGAAATATTGACTGTAAAATGTCTGAGTAACTGACTCCAGAGTACTTGATCTTTTCCTGAGAATCAGCTGGACAGGTGTTGTGGCCCTTTATCTGTTGATCCTATAGACTCCTTATGTAACAGCTCAGTCTTAACACACTGAACATGTTAAAGTAATGTACATTTATAGCAATAAAAATCCCCAATATCATATGATGGATTGTATACATTATGCTGTTATAAACGACCTACCACATTATAAAGCA

Function

GO:

id name namespace
GO:0000045 autophagosome assembly biological_process
GO:0043653 mitochondrial fragmentation involved in apoptotic process biological_process
GO:0015031 protein transport biological_process
GO:0005737 cytoplasm cellular_component
GO:0019776 Atg8 ligase activity molecular_function
GO:0019777 Atg12 transferase activity molecular_function

KEGG:

id description
K08343 ATG3; ubiquitin-like-conjugating enzyme ATG3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1736517 lncRNA upstream 1609 11705552 ~ 11764757 (+) True G1517042
TU1736553 lncRNA upstream 8400 11757256 ~ 11757966 (+) True G1517073
TU1736484 lncRNA upstream 114087 11632537 ~ 11652279 (+) True G1517014
TU1736480 lncRNA upstream 141088 11624596 ~ 11625278 (+) True G1517010
TU1736472 lncRNA upstream 157523 11608248 ~ 11608843 (+) True G1517002
TU1736545 lncRNA downstream 44616 11817355 ~ 11820418 (+) True G1517065
TU1736577 lncRNA downstream 64605 11837344 ~ 11837614 (+) True G1517095
TU1736540 lncRNA downstream 65788 11838527 ~ 11841346 (+) True G1517060
TU1736583 lncRNA downstream 88633 11861372 ~ 11862045 (+) True G1517101
TU1736636 lncRNA downstream 167323 11940062 ~ 11941105 (+) False G1517150
XM_036951409.1 mRNA upstream 7078 11749729 ~ 11759288 (+) True LOC110495615
XM_036951829.1 mRNA upstream 309487 11453014 ~ 11456879 (+) True LOC110528750
XM_036951824.1 mRNA upstream 345463 11362611 ~ 11420903 (+) False LOC110495609
XM_036951842.1 mRNA downstream 375 11773114 ~ 11779870 (+) True LOC110495619
XM_036951383.1 mRNA downstream 18862 11791601 ~ 11802738 (+) True LOC118941042
XM_036951852.1 mRNA downstream 30438 11803177 ~ 11808380 (+) True LOC110495630
trnas-cga-32 mRNA downstream 36170 11808909 ~ 11808990 (+) True trnas-cga-32
XM_036951851.1 mRNA downstream 36304 11809043 ~ 11814232 (+) True LOC118941095
TU1736489 other upstream 122608 11642789 ~ 11643758 (+) True G1517019
TU1736485 other upstream 131387 11633067 ~ 11634979 (+) True G1517015
TU1735957 other upstream 673812 11086085 ~ 11092554 (+) True LOC118941092
TU1735992 other upstream 749277 11016765 ~ 11017089 (+) True G1516637
TU1735389 other upstream 1439228 10319310 ~ 10327138 (+) True G1516136
TU1736637 other downstream 167323 11940062 ~ 11941105 (+) False G1517150
TU1736988 other downstream 1060912 12833651 ~ 12872163 (+) True G1517414
TU1737033 other downstream 1161915 12934654 ~ 12936278 (+) True G1517456
TU1737034 other downstream 1164784 12937523 ~ 12942494 (+) True G1517457
TU1737133 other downstream 1414362 13187101 ~ 13188080 (+) True G1517545

Expression Profile