RNA id: XM_036951842.1


Basic Information

Item Value
RNA id XM_036951842.1
length 3077
RNA type mRNA
GC content 0.46
exon number 6
gene id LOC110495619
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 11773114 ~ 11779870 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCGTCATTTTACTGCGACGCACAATATTTTCACTTGGTTTTCCATATTGCTGTCAGATCAAATCTAGTGACAGTGGTGCGTGGAGGTCATGTTATGGTGTGCTTTTTTGGGTTGACATGTCTCAACTATATCCCACGATCTTACTTTGTGTTTATGGATTCTTCTCTAATCTCCGACCTTCTGAGCCTTTCTTAACTGCGTTTTTGATGGGACCTGATAAAAACCTTACTGAAACAGAGCTTGTAAATGAAATCTACCCAATATGGACCTATTCCTACCTCGTGCTACTCTTCCCAGTCTTCCTGGCCACGGACTACCTGTGTTACAAGCCTGTGCTGATCCTGCAGGCGGTGAGCTTGGTAGTGACCTACTTTATGCTAGTGAAGGCCCAGGGCGTGCTGGCCATGCAGCTTCTGGAGTTGTTCTTTGGCCTCGCCACTGCCACAGACATAGCCTACTACTCTTACATCTACAGTGTGGTGGAGCCGGCCCAGTACCAGAGAGTCACTGGTTACTGTCGTAGTATTACGTTACTGGGCTCCGCTGCTGGCTCGCTGGCTGGGCAGCTGCTAGTGTCTGTGGCTCAGATCCCACTGCTCTACCTCTGTATTATCACATTGGTGTCGGCCGTCTTGGCCTTCGTGGCGCCCTGGTTTTTGCCCATGCCCAGTAAGAGCTTGTTCTTCCATAAGCGCcaggggacagagggggagaagcCGGTGCATCAGAACAGCAGGGTTCCCATGGATGAAGCAGAGGACCCTGAGAGCAAAGTACCTCTGAAGATTGATGAGGTCACCATGGTCGTGACGGCCAGTGATGGGGGTGGAGCTAGCAGTGGCTTAGTGGACGTGTTAAGGATCCTATGGGAAGACTTCCTGCAGTGCTACTCATGCCCTGCCCTCCTGTCTTGGTCGGTGTGGTGGGCCCTCTCTACGTGTGGCTACTTCCAGTTGGTCAACTATGTTCAGGCCCTGTGGGAGAAAGTCCTGCCTTCCCAGGAGTTTGAGATCTACAATGGATACGTGGAGACAGTCTCCACCTTGTTAGGTGCGTTAGCAGCCTTCGGGGTGGGCTCCATCAAGGTCCCCTGGGCAGTCTGGGGAGAGCTGGCTCTCTGCATCTTCTCAGTGGTCATGGCTGTGGCTGTGTACCTCATGGACACCATCAGGAACATCTGGGTGTGCTACACCTCCTATGTGGTCTTCAGAGCCACCTACATGCTGCTGATAACCATCGCTACGTTTCAGATTGCTGCCAACCTGAGTATGCAGCGATATGCCTTAGTGTTTGGAGTGAACACTTTCATTGCCCTGCTGCTTCAGACTCTGCTTACTGTTGTGGTAGTGGATTCTGTCGGGCTGGGCCTGGACATTTTCCCACAGTTTCTCATATACGCCAGCTACTTCGCTGTGATCGCAGTGATCTTCCTCATGGCCGGGCTGTACAAGCTGATGTTGAGGAGAAGATCCCAGCCAGCGGCCCAGCCTCAGACTGATAGTGGAGAGACTGAGTCAGACTGCCTTAGCAGAGACTCTCCTCCCCTCAACGAGCTGCAGCAGATCACAGGGACATGACTACCTGTTTATGGTGCAGTACTAACAAAGAGGAACACGTCAGGACCAGTGTTGGACCCAATTCCACTTAAACTCAGTCAATTCAGGATgatttgaaatggaattgaccccaaccggGGTCATCACACCATGCAAGTGTGTTGTACGCCTTCGCTTGCTCAAGCACATGGTTGATGGATTGGGTGCAGGCCTAAAAACACTTGCAGAGTGTAACATTTGAATGTTTCTATGATAGCCTTATGGGTTTAATGAAAATGTGTAGTTTGCCTATATTTAGGCTTTGTTTGTGACTTCCAATTTTTTTTGTCACACAAGCTTTGTTTGTGGTGTATGTTGCATAATGGTCGTCGGCCTGCTATCTGATTTTCACACTTTAAATCCCTGTCTTAACTACCAAAGGCAGTCAACGGATAAGCAATACATGTTACATTCTGAACTGCTAGAAATATGTTATGAATTGTTAGAGTTCAATTGTTGCAAGAATAGCTTTTTATCAAATGTACCCACAAGCATCGATTCAAATGTCGCAAAGATTTCATTGATCAGCAATAGATTGTCAAGTGTCTTTAGATAAATATGGCCATACATTCATGGGTCAAAAATGAAAAGCATATGTAAGTGATTGACATGGAGTTGGAGGCCatatttacagtatattattGGATTATATTCACTGGCCTTGAATGTAGGTCTACTACTGAAGTGGTTCAGCTATACTGTATTAATACAAATTAGCTTCTTCTTTTACTATCGATACAAATCCCAGTAGTTGAAAGGCTGAGCGCTGTAGCAGATGACTGAAGGGGATGATTATGTACTGAGAGCTGATTCAGTGTTGTCTGGTGGTCACTGAAAGACCAAAAGCACCTACAGTACATGTTCTAACTTACCGGTTACACAATGTGCTGCCTCTGTTACAAGAGCATCCCCTAAAATAGTCAAAAGTTTAGCCTCGTTCTGTTTTCTTCAGTCATAATGAGAATCATGTTGGTAACATATTTATGTCATGATACTAAGGCctggattcaatcagatcaagtgtTAACCGCTGTTAGCTGACACCCGCTAATCGAGGTGTAGatgacatctcacattccagtgttctaaCTTGTAAACGACTGCATAGGACTTCTCTTTAACGGGACTCCATGCAGCAAATGGCGAGGTCCGCTTTAGGTGTTATGCTGGGAGCAGCTTGtagatttgacagctctaaaaCATTTCCACCgccaaaacaaccgctatgcAGATGTCTGCTAAagcagttccacctccgacaccgccaaaacaaccgctatgcAGATGGTATGATTGAACAGAGCACCTAATTATAGTAGGCATTTTAAGAAACAATTCatgtttattttatattttaacaATATGTTCATTTTGACTTCACACTCACTACATTCTCACTACATTCTCTCTTCAGTCTTCCCTGTTTTTGTTCTTATGTGTAATGTTTTTCAATAAACAAATAGTTTTGTAGtataaaatgtt

Function

GO: NA

KEGG:

id description
K14610 SLC19A2_3, THTR; solute carrier family 19 (thiamine transporter), member 2/3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1736517 lncRNA upstream 8357 11705552 ~ 11764757 (+) True G1517042
TU1736553 lncRNA upstream 15148 11757256 ~ 11757966 (+) True G1517073
TU1736484 lncRNA upstream 120835 11632537 ~ 11652279 (+) True G1517014
TU1736480 lncRNA upstream 147836 11624596 ~ 11625278 (+) True G1517010
TU1736472 lncRNA upstream 164271 11608248 ~ 11608843 (+) True G1517002
TU1736545 lncRNA downstream 37485 11817355 ~ 11820418 (+) True G1517065
TU1736577 lncRNA downstream 57474 11837344 ~ 11837614 (+) True G1517095
TU1736540 lncRNA downstream 58657 11838527 ~ 11841346 (+) True G1517060
TU1736583 lncRNA downstream 81502 11861372 ~ 11862045 (+) True G1517101
TU1736636 lncRNA downstream 160192 11940062 ~ 11941105 (+) False G1517150
XM_021570956.2 mRNA upstream 375 11766363 ~ 11772739 (+) False LOC110495622
XM_036951844.1 mRNA upstream 375 11766364 ~ 11772739 (+) False LOC110495622
XM_036951843.1 mRNA upstream 375 11766366 ~ 11772739 (+) True LOC110495622
XM_036951409.1 mRNA upstream 13826 11749729 ~ 11759288 (+) True LOC110495615
XM_036951829.1 mRNA upstream 316235 11453014 ~ 11456879 (+) True LOC110528750
XM_036951383.1 mRNA downstream 11731 11791601 ~ 11802738 (+) True LOC118941042
XM_036951852.1 mRNA downstream 23307 11803177 ~ 11808380 (+) True LOC110495630
trnas-cga-32 mRNA downstream 29039 11808909 ~ 11808990 (+) True trnas-cga-32
XM_036951851.1 mRNA downstream 29173 11809043 ~ 11814232 (+) True LOC118941095
XM_036951855.1 mRNA downstream 106003 11885873 ~ 11926209 (+) False LOC110497058
TU1736489 other upstream 129356 11642789 ~ 11643758 (+) True G1517019
TU1736485 other upstream 138135 11633067 ~ 11634979 (+) True G1517015
TU1735957 other upstream 680560 11086085 ~ 11092554 (+) True LOC118941092
TU1735992 other upstream 756025 11016765 ~ 11017089 (+) True G1516637
TU1735389 other upstream 1445976 10319310 ~ 10327138 (+) True G1516136
TU1736637 other downstream 160192 11940062 ~ 11941105 (+) False G1517150
TU1736988 other downstream 1053781 12833651 ~ 12872163 (+) True G1517414
TU1737033 other downstream 1154784 12934654 ~ 12936278 (+) True G1517456
TU1737034 other downstream 1157653 12937523 ~ 12942494 (+) True G1517457
TU1737133 other downstream 1407231 13187101 ~ 13188080 (+) True G1517545

Expression Profile