RNA id: XM_021608408.2


Basic Information

Item Value
RNA id XM_021608408.2
length 2088
RNA type mRNA
GC content 0.54
exon number 10
gene id zswim2
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 12038742 ~ 12045602 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCAAGGCATCTTTCTGGATTACCATGACTACGGCAAACAGGTGTCTATTAGTTGTTGCTGCTTACGTCAGTTTCAGAGCGTTTAACaataagctagctagctgcatagTTAGCTACTAAAGTTTAAACCTTTGCTGATATAGCAGGGCACGCACATCGACTTAGTATGAAGACATGGCTCTAGTCTTGTCTCCTCCTCAGTCCTCTTCCCTAGAAATTCTGTGAGAGTTGTGCTATGTTCAGAAAAACTGTCTGGAAGAATACCGTGAGTGATGCCGTTAGCTGGCACCAGGACGAGGCCCTGAACACGACCATGTTCATCCTGAAAGAGTATGGTCCGACCGGATTCCTACTCAAAGAGGAGGGGGAACCCAAAAACTTCAAAGTGTTCTTGGGAGACCCTCATACGTGTACCTGTTCAACATTCCACAAAGAGAGAGACCTCTGCAAACACATCTGCTGGGTTTTATTGCGGAAATTCCGACTGCCTAGAGAACATGAATATTGCTTCCAGCAGGTCCTGGTTGAAAGGCAGATCCTGGAGCTGCTACAGGGTTTACACAGGAGCAGAACCCCCCGGCCTGTACACCCACCCTGCTCTGAGGCTGACCCTaaccccagaccagacccagctgagGGGGACGGGGGGGTCAGACAGAAGGAGATCGAAGCCGAGGATGTGTGTCCCATCTGTCAAGAGGAGTTGCTGGGGAAACGTCTGCctgtgtcttactgcagGTTTGGCTGTGGCAACAACGTCCATATATCCTGTATGAAGGTGTGGGCAGATCACCAGGCATGTccggagggggagggggaagccATGGTGAAGTGCCCGCTGTGCCGGGAGGACTTTGGGCCGGTCAAGCTGCTCCTGGAGCAGGTGAGGAATGTGGCTAAGCTCCACAcagctgctgagagagagaggcccgaCAGACACCTCGGGGTGCTCTGCAACAACTGCAGGGTTGGCAAGTGCTTCAAGTGCACAGTCTGCCGGTACTATCACCTTTGCGAGGACTGTATAAGAAGGTGCTGTCACCCTCAGCATGCGTTTGCCATACGTACGAAAAGGACTGCGAAGTGGCTGTCCTTGGGTCAGCGTGTGTTCAACACACTGGGTGAACCACGTGAGATGACCACTCAGTCAGTGGGTGACAGCATGATTCCTGTTGAGAGTGACCCACTGCCAGAGCACCTGGTCAGGAGCCTCCTTTCGGTCAGGGTGAGGAGAGGCTGCCCCCTGCTGGACCCTGGGCAGCAGTGTAGGATCTGCCTGAAGAGCTTCCAGCAAGGGCAGCAGGCCAGACACTTGCCCTGCCATCACAGGTTCCACACAGACTGTGTCGACCCGTTGCTTCGGAGGTCCAACTCCTGCCCTCTGGACGGATACGTCATCTACAACCCCCTAACATGGAGCAGCGGAGGGGGGAAGGGTACACCCAAGCTGGCCTCCTCCCTTGACCATCCAAAGCTCTCAGAGCAGCACAGACTGGAGCTGTTTGTCCCAGGAGTAGCTCTGCTGGACAGAGCAGCCAGAGTGGTTCCCTCCCTGAGTATGTTCAGCTCCGAGGGCTCAGCCGATACCCTAGTACCTCTCCCTCAGGACACTATGGTCGTCGGCTTACAAGGTCTATGCATCATCAATACAGTGAACATTGAGAGCATGGAGGGTGGAAAAAGCAGGACAGAGAAAGATGGAAGTCCAGTCAAATCAGTCATTCTCAACAAGAGCCTTTCCTCCCAGCATCTAAGGACAGACGTGTCTAGAGTGAGGTTGGGACGCACCAACTCAAGCTCCTCGACCAAGAGTTTGGCCCAAAACAATGCTACCTCAACTAACAGGCTGGGTGGGGTCTCTGGAGGGACGGGAAGGGCCCAGCCGAGTCTGTTTGTGGGTGTAAACAGGTCAGAcatgactgctgctgctgctcagaCTAGAGCTGTCATCACCCTGTGGAGAGCCAGGCCCCAGTGGAAGAGGAGACCCAGGGTACCCAGACCCAGTACAGGAGACAGCCAGCAAGCCACAGGCCTGAGGATGACAGGGGTACTGATCAATGCTCCTCACCAGGGAGAAAAGGAGTGA

Function

GO: NA

KEGG:

id description
K15716 ZSWIM2; E3 ubiquitin-protein ligase ZSWIM2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1736679 lncRNA upstream 41083 11996301 ~ 11997659 (+) False G1517176
TU1736595 lncRNA downstream 21782 12067384 ~ 12068234 (+) True G1517110
TU1736730 lncRNA downstream 40288 12085890 ~ 12086420 (+) True G1517202
TU1736732 lncRNA downstream 43068 12088670 ~ 12088910 (+) True G1517204
TU1736734 lncRNA downstream 43785 12089387 ~ 12089608 (+) True G1517206
TU1736608 lncRNA downstream 59955 12105557 ~ 12161243 (+) True LOC110527243
XM_036951864.1 mRNA upstream 17400 12007954 ~ 12021342 (+) True LOC110527250
XM_036951855.1 mRNA upstream 112533 11885873 ~ 11926209 (+) False LOC110497058
XM_036951856.1 mRNA upstream 112533 11885873 ~ 11926209 (+) True LOC110497058
XM_036951851.1 mRNA upstream 224510 11809043 ~ 11814232 (+) True LOC118941095
trnas-cga-32 mRNA upstream 229752 11808909 ~ 11808990 (+) True trnas-cga-32
XM_036951873.1 mRNA downstream 3377 12048979 ~ 12060014 (+) True dytn
XM_036951870.1 mRNA downstream 23447 12069049 ~ 12080939 (+) False LOC110538823
XM_036951872.1 mRNA downstream 23448 12069050 ~ 12080939 (+) False LOC110538823
XM_036951871.1 mRNA downstream 23970 12069572 ~ 12080939 (+) True LOC110538823
XM_036951878.1 mRNA downstream 48300 12093902 ~ 12161272 (+) False LOC110527243
TU1736637 other upstream 97637 11940062 ~ 11941105 (+) False G1517150
TU1736489 other upstream 394984 11642789 ~ 11643758 (+) True G1517019
TU1736485 other upstream 403763 11633067 ~ 11634979 (+) True G1517015
TU1735957 other upstream 946188 11086085 ~ 11092554 (+) True LOC118941092
TU1735992 other upstream 1021653 11016765 ~ 11017089 (+) True G1516637
TU1736988 other downstream 788049 12833651 ~ 12872163 (+) True G1517414
TU1737033 other downstream 889052 12934654 ~ 12936278 (+) True G1517456
TU1737034 other downstream 891921 12937523 ~ 12942494 (+) True G1517457
TU1737133 other downstream 1141499 13187101 ~ 13188080 (+) True G1517545
TU1739079 other downstream 2389160 14434762 ~ 14436120 (+) True G1519096

Expression Profile