RNA id: XM_036951870.1


Basic Information

Item Value
RNA id XM_036951870.1
length 2662
RNA type mRNA
GC content 0.53
exon number 17
gene id LOC110538823
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 12069049 ~ 12080939 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATTTCAACCGGATGTACTAACGTTTTACGGGGTGAAAGGGCATATTATAACTCGACAACGTTAAATATCTTTATGGTTATAATAGTTTTGAACATATGCATATGTTTTATTATTATGTAAATACATGTAACTTAATTTTAAATTAAGAAGTATGGGCAAAATTAGCTATTTCTTCCTTTAATATGTCGTGGTGAATCGTTCATTTTCGTTGTTGTGACCGAGATTCGCAGTAGGATTGCTAGCTAGTACATACATAAATCGCTGTTCTGGTCAAGAAGGCCAAATAGCGACAAGCGTCATGTTGCGTTTGCCATCCGTTAGCCGCGCGCTAGCAGGGGCAGCCAAGGGCAGCCTGGCCCCCTCCAACAATGTGCGTACCTCAGCGAGAGCTGCCAGTAACATGGTAGAGGTGTTTGTTGATGGGAAACCAGTGGAGGTGCTGCCTGGAACCACTGTGCTGCAGgcctGTGAGAAGATGGGGGTGCAGATTCCTCGGTTCTGCTACCACGAGCGCCTGTCCGTGGCTGGGAACTGCAGAATGTGTCTGGTGGAGATTGAGAAAGCCCCAAAGCTGGCGGCCGCGTGCGCCATGCCAGTGATGAAAGGCTGGAACATCCTGACCAACTCAGAGAAGACCCGCAAGGccagagagggagtgatggagttcCTGCTGGCTAACCACCCTCTGGACTGCCCCATCTGTGACCAGGGAGGAGAGTGTGACCTTCAGGACCAGTCCATGCAGTTTGGTTCAGACCGCAGTCGTTTCTCTGAGGACAAGCGGGCTGTGGAGGATAAGAACATTGGACCACTCATCAAAACAATCATGACCCGCTGCATCCAGTGCACACGCTGCATCCGTTTTGCCAGTGAGATTGCAGGTGTAGAGGACCTGGGTACCACAGGCAGAGGGAACAACATGCAGGTGGGAACGTACGTGGAGAAGATGTTCATGTCCGAGATGTCAGGAAACGTCATCGACATCTGTCCCGTAGGAGCCCTCACTTCCAAACCATACGCCTTCACCTCACGACCCTGGGAGACCAGGAAGACAGAGTCTATAGATGTGTTGGATGCAGTAGGCAGTAACATCATTGTGAGTACACGTGGTGGAGAGGTGATGAGGGTTCTGCCCCGCCTGAACGAAGACATCAACGAGGAGTGGATCTCAGACAAGACCAGGTTTGCGTATGACGGTCTGAAGCGCCAGAGGCTGACCCAGCCTATGGTGAAGGACGCGTCAGGACAACTGGTCCCCACATCCTGGGAAGACGTACTCACACGCGTGGCTGGAGCAttgcAGGGAGCCCAGGGCAGTGACGTAGCAGCCATAGCTGGAGGCATGGTGGATGCAGAGGCTCTGGTGTCTCTGAAGGACCTGCTCAACAGACTGAACAGTGACAACCTCTGTACCGAGGAGGTCTTCCCTGATGCTGGGGCTGGCTCTGACCTGCGTTCCAACTACCTGCTGAACTCTGGGATCAGTGGCATTGAGGAAGCTGACCTGCTGTTACTTATAGGAACCAACCCTCGTTACGAGGCCCCACTCTTCAATGCACGCGTCCgcaagagcTGGTTGCATAATGAGTTGAAGGTGTCTGTGGTGGGGAGCAGTGTGGATCTGAGTTACACTTACGACCACCTGGGAGAGTCCACTCAGGTGCTGCAGGACATCGCTAACGGAACACACCCCTTCTGCCAGGTGCTCGCGCAGGCCAAGCAGCCGGTAGTGGTGGTGGGCAGTGCCTCTCTTCAGAGGGATGATGGAGGAGCCATCTTGAGCTCTGTGCAAACCATCGCCCAGAATGCCCGGGCCAGCAGCGGAGTGGAGGAGGGCTGGAAGGTCCTCAACGTGCTGCACAGGGTAGCCAGTCAGGTGGCAGCCCTGGATCTGGGCTACAAGGCGGGGGTGGAGTCTATCCGTAAAGCCCCGCCCAAGGTTCTGTTCCTGCTAGGAGCTGACAGAGAATGCATCACCAGACAGGACCTGCCTAAAGACTGCATGATCATTTACCAGGGTCACCATGGAGATGTGGGTGCCACCATGGCTGATGTCATCCTGCCCGGCGCGGCGTACACTGAGAAGAATGGAACATATGTCAACACAGAGGGGAGGAGTCAACAGACACGCGTGGCCGTCACTGCGCCCGGCATGGCCAGGGAGGACTGGAAGATCATCAGAGCCATCtccgagCTGGCGGGGCTGACTCTGCCCTATGACTCTGTGGATGAGGTGAGGGGTCGGCTGGCCGAGGTTTCTCCTAACCTGGTCCGCTACGACGACGTTGAGGAAGCCAACTACTTTAAACAGGCCAACCAACTCTCACAGgctGTGAATCAGACTCTTCTAGCAGATCCTCTGGTCTCTCCTCAGCTGACCGCTAAAGACTTCTATATGACAGATCCCATTAGCAGAGCGTCTCAGACCATGGCCAAGTGTGTGAAGGCCGTCACAGAGGGAGCTGACGCCGTCGATGAACCATCCATCTGCTGAACTCATACACACTCAGAcagccaaaacacacacacacagtgatgttgCTCTCCTTTATTTAAGTTGTTTTTTGCTGATTGCTGTAAAGATGTTCGAGGGAAGAGGCTTTGTTAAAGAAAGCTGAAAATGAAACTGTACTCTGATTATGAATAAAATCCTATCCTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1736595 lncRNA upstream 815 12067384 ~ 12068234 (+) True G1517110
TU1736679 lncRNA upstream 71390 11996301 ~ 11997659 (+) False G1517176
TU1736730 lncRNA downstream 4951 12085890 ~ 12086420 (+) True G1517202
TU1736732 lncRNA downstream 7731 12088670 ~ 12088910 (+) True G1517204
TU1736734 lncRNA downstream 8448 12089387 ~ 12089608 (+) True G1517206
TU1736608 lncRNA downstream 24618 12105557 ~ 12161243 (+) True LOC110527243
TU1736760 lncRNA downstream 120771 12201710 ~ 12202138 (+) True G1517229
XM_036951873.1 mRNA upstream 9035 12048979 ~ 12060014 (+) True dytn
XM_021608408.2 mRNA upstream 23447 12038742 ~ 12045602 (+) True zswim2
XM_036951864.1 mRNA upstream 47707 12007954 ~ 12021342 (+) True LOC110527250
XM_036951855.1 mRNA upstream 142840 11885873 ~ 11926209 (+) False LOC110497058
XM_036951856.1 mRNA upstream 142840 11885873 ~ 11926209 (+) True LOC110497058
XM_036951878.1 mRNA downstream 12963 12093902 ~ 12161272 (+) False LOC110527243
XM_036951410.1 mRNA downstream 103770 12184709 ~ 12214234 (+) True LOC110528736
XM_036951371.1 mRNA downstream 133611 12214550 ~ 12216720 (+) True LOC118941035
XM_036951339.1 mRNA downstream 135775 12216714 ~ 12220754 (+) True LOC110527236
XM_036951333.1 mRNA downstream 144446 12225385 ~ 12229990 (+) False LOC110527239
TU1736637 other upstream 127944 11940062 ~ 11941105 (+) False G1517150
TU1736489 other upstream 425291 11642789 ~ 11643758 (+) True G1517019
TU1736485 other upstream 434070 11633067 ~ 11634979 (+) True G1517015
TU1735957 other upstream 976495 11086085 ~ 11092554 (+) True LOC118941092
TU1735992 other upstream 1051960 11016765 ~ 11017089 (+) True G1516637
TU1736988 other downstream 752712 12833651 ~ 12872163 (+) True G1517414
TU1737033 other downstream 853715 12934654 ~ 12936278 (+) True G1517456
TU1737034 other downstream 856584 12937523 ~ 12942494 (+) True G1517457
TU1737133 other downstream 1106162 13187101 ~ 13188080 (+) True G1517545
TU1739079 other downstream 2353823 14434762 ~ 14436120 (+) True G1519096

Expression Profile