RNA id: XM_036951410.1


Basic Information

Item Value
RNA id XM_036951410.1
length 5469
RNA type mRNA
GC content 0.51
exon number 25
gene id LOC110528736
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 12184709 ~ 12214234 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATTAATCCACTAATTTAATTTGTCTATGAAAGCCAGTATTTAAGTAGGCTAAACATGTGTAGTGGCAATAGTAGGCTTAGACTGCCTGTAAAAATAACAGCCTAAACCAGAAAGGTAGAATATGGGTGAGAAATCAGCAGGCCCATTATAGGCCAATAGGACAGGCCTATTCATAGAAATGGACCTAATAAAGGAGGGGTCAGAAGTCTGGACAATGAGCATCTGTGAGATAGATAGCTCGTCGTTAAACGATTAAGACTCTAACTACCAGGATGCATCAGAACAAAACAAatcctctcccctctgctctggGTAGAGATTGCCCAAAATATGATAGGATCAGTTTATCCTCCCCAAATCATAACCTCAATTATTACTGGGTCACGCGTAAAACTGACtctagatcagtgtctaggggtagACGTTATCCGAGTCCCCCTCCCCTCGCGTCTCGCTCACGGCTGTGGGCTGTGCGCTGCAGGGGGGCGGGAGGCGAGGAGAGCGAAGCGGCAGAAGGCTCATTGTGTGTCGGTTAGAAAGTGGGGGTCGTTGCGGGGGGGAGAAAGCGTGCGTGGAGGCTGAACTCTCGCTTTTGTCGCCTGTGGAGGAGGGGGCGGATTAAGTAGCCAGCTCGCTCACACACACCAGGGACGCCCGGTTCGTttatcagcatcatcatcatacCCATTACCGAGGATACACAGTGAACCGGGAAGGGATGCAAATTTAGCGCGAGACGGACAGTGGGACTTCGGTCTCAGCTGGATTCGGATAAATGGTGCGTGCGCCGTTCCGTCGTCGGCGATGAGAAGAAAGGAGGACAAAAGATGAACGGATGGAGGATAGACACGGCCCCCCGGTAGACACGCGCCTTCGGTTTACCGCATCTCTCTGATCTCGTGCCGCCGTGCGTGAGTCTGTCGGTCGGTCGTTCAGACTGTGTCTCACTAGGGAGAAAAACCCGAACAGTATTCCCGAATTACAGGAGGCGTTGCCTGTATCTGACTGACTGCAGAGAGACTATTGTCTGTGTGTGATTTGACGTTTAGGGGTGTGATTGTATGTGAGcgggtgtgcttgtgtgtgtggtgacTGTGAAAGGTGTGTTTGTCTGATTTGATGGCGAggggtgtgtgagggtgtgtgagtTGCTGGTGTAAGGGTGTGTGTGGGTTgacagtacaggtgtgtgtgtgagccatgGGGAACACAGAGAGTATGGAGTCTCAGCTAGCTGTCATCAGGGCCAGGGCTGCTCCTGTCAAGCTGCCCATGCCTGATCCTGCTGAGCTGGAAGAGAGGTTCTCCATTGCACTgaacTCTATGAACCTGCCTCCTGATAAGGTGCGTCTGCTCCGTTGCTACGACAACGAGAAGAAGTGGGAGCTGATATGTGATCAGgaaCGGTTCCAGGTGAAGAACCCTCCTCACACCTACATTCAGAAGCTGAGAGGATTCCTTGACCCGGCCGTCACACGCAAGAAATTCCGTCGGAGAGTCCAGGAGTCGACTCAGGTGCTCAGAGAACTGGAGATCTCACTACGGACCAATCACATCGGGTGGGTGAGGGAGTTTCTCAACGAGGAGAATCAGGGCCTAGATGTTCTAGTAGAGTACCTCTCCTTCGCTCAGTACGCGGTcacgtttgaTGGGGAGGTATCGGAGGCCAGTACTGAAGAGAGAGCTGTAGATTCCCCCTGGAGTCGTTCTATAGAAGATCTCCATGGAGACAGCAACCTGCCCTCCCCCTCCAGTGGCAACAACGTACCGCGCTCCTCACGCCACTCTATCGgGTCAGCGTTGGTGTCCAGGTCTAACACACTGCCCAGTAGGAAGACACTGAAGAACTCCCGCCTGGTGTGTAAGAAGGACGACGTTCACGTGTGTGTGATGTGTCTCAGAGCCATTATGAACTACCAGtATGGCTTTAACATGGTAATGTCCCATCCTCATGCTGTGAATGAGATCGCTCTGAGCCTCAACAACAGAAACCCAAGgactaAGGCTCTGGTATTGGAGCTGCTGGCTGCTGTGTGTTTGGTCAGAGGAGGTCATGAGATAATCCTGTCTGCTTTCGACAACTTTAAAACAGTGTGCTCAGAGACCCTGAGGTTTGAGAAGCTGATGGAACATTTTAAGAATGAGGATGACAACATTGACTTCATGGTGGCCTGTATGCAGTTCATAAACATTGTGGTACATTCTGTTGAGGACATGAACTTCAGAGTGCATCTTCAGTATGACTTCACCAAACTCAATCTGGACGATTACCTAGAAagGTTGAAGCACACAGAGAGTGATCGGCTGCAGGTGCAGATCCAGGCCTACCTGGACAACGTGTTTGACGTGGGGACGCTGCTGGAGGACGCAGAGACCAAGACCGCCGCactggagagggtagaggagctggaggagaataTGACCCacATGACAGAGAGGCTCCTGGACACAGAAAACGAGGCCATGGCCAAGATAGTAGAGCTGGAGAAACAGCTGATGCAAACCAACAAGGAGCTGGACACCATACGGGATGTGTATGCTAGTGCTAACAACCAGGTGCACACCCTGCGGAGGATCGTGCGTGAGAAGGACCAGACCATCCGCAGGCAAAGTCGACTGGAGCGCCATGCTCAGGAGGGTGGGAGGGGGCACCTTGGTGGTTCCGGAGACAGTGGGCTATGGCTTGTCAGGGGCGGGACTAGGGATGATGccagcccctccccctcccccaccacctccaccaaTGCCAGGGATGCCAGGGAACATGTCAAACGGGCCCTACCCtgctcctactcctcctcctcctcccccacctccccctcctccccccttatGTTCCATGGAGTCCTCCGGtcctctgcctccccctcctcccccatgcGCCCCTCCACTCCCCGGCTGTGGTGGATCACCACTGTCATCTTTAACTCCGGCCTGGCAGAGGGGTCACTCAAGCTGTTCTGTAGGTTCCCTCTGATCACACGCTTACAACTCCACGCAATCATCGCTGCTTCTGTGTCCATCAAGTCCTCCCAGAAACTCAAGAAGATTCTAGAGatTATCCTGGCTCTGGGGAACTATATGAACAGCAGTAAGAGAGGAGCGGTGTACGGATTCAAGCTGCAGAGTTTAGAcctgCTGCTGGAGACTAAGACTACCGACAGAAAGCAGACCCTGCTGCATTACATAGCCAACGTGGTGAGAGAGAAATACCCCGGAGTCGCTCTGTTCTACAATGAGCTGCACTATGTAGAGAAAGCTGCCgcagtgtcccTGGAGAACGTGGTGTGTGACGTGAAGGAGTGTCAGCGTGGTATGGATCTGTCGTGGAGGGAATACAGCATGCACGGCCACAACCCACTCCTCAAAGACTTCATCAGCAAACACGAGACTCGCCTGCAGAAACTACAGGAGGACGCACACATCGCACAGGATGCATTTGACGATGCGGTGAAGCACTTTGGGGAGAGCTCTAAAACCATgcctccctctgtcttcttcccTGTGTTTGTACGATTCATCAAAGCCTACAGGctggcgGAGGAGGAGAATGAGCAGAGGAGGAGGCAAGAGCAGGCGCTGATAGAGAAGCTGGAGCAGGAGGAGCTGCAACAGGAGCAGGAGGCGCCTAAGtccccgtCCAACCGTCCAAAGCAGCGGCAGCAGGAGTCCCTGATCACAGAACTGAGGAGGCGACAGGGCGGTAAAGACAGCAGACATGTCTACGAGGGCAAAGATGGAGCTATAGAGGACATCATTACAGTGCTGAAGACCGTCCCTTTCACTGCCAGGACGGCCAAACGCAGCTCTCGCTTCTTCTGTGATCCCACCCACACTGAATAACACTGCTAaactctcagagagagagagagaaatacagggtagaggggagggagaggggtgagggaaaGCTAGGTGGGAGAGATAAAGGGGAATAAcaatgagatagagagaggagagaagcgtggggaaaaagagaggcagttagagagaggggggagggagggggtgagagaaagcgagagattgACCCGGTCTCAGAAGTAGTGACTCTACCAGAGAGAAGCTGAACTCTGAACTCTATAGCAAGACAGACATCAAGATTACCTGTGACCTCACCTGTCTGGTCTGACATCACTGCCCCCACCCCCCATCCCCTCTGTGTTACTTACACATGTTATGAAGCTTCTTTGCTGATTATAACTGTTTATAACCCTCCCATAACCCTGGACTGTAGCCCTGGAATCAACCTGCAACCCACCATGCACTTTGACTTTCTGCCCTCTAAACCCGAAGACTGTTGAAAGGGGTCGGGTAGAGGGAGGAACTTGATACGCGATGACAGTGACTGGACATTTAGTAGCAACACAGTCTGGTCATTTAATAGCTACATAGCATTTCCAGTTTATCAGTTAATAGCAGACATGACAAgcaaaacagaacagcaaaaataAACAGTTGTTTTTTGTCCAATTAGTATTagtgatgtacagtatgtgtctctAAAGCTGTGTGATGATGTCAGCAAATGACATGATCGCTGTCATAGGATAttgagaagggagggggagaagttTGAAGAGTTTCTTCTTGTTGAACATTCCAACCAATTCTAATTGATAACGACATCACAAAGGGTTCTTAACCCACTCCTATCCAGCTGTAAGATGCCAGAACTGAACACTGAGAATAGTGTTCGAAAAGCTCACTCCTACAAGGTTCCCTCTTCTCCGTCTGCTGCTGTGTGACAGTGAAACGTGTACAGCGCTCGCTACGTTCACTACATTGACTATGTTTACTATTTACTACCTTTAATACCTTTAACCTCCAACAGGGTTTTTCAAAGCTCAGGCCCTCCAGTTCCTCAGTCCTGCTGGTTTTCCTTTCTCCCTGGCACTTGATTGATCGTTTAATGTTACTGATAATGATTGgctgcacagtgcacacacacctggtttcccagGTAGAAATCGGTCTCTGATTAAAAGAGAAGTATGAAAACCAGTAGACACTGTGGCCCTCGAGGACAGGAGTTGATACCCCATACTACCCTAAAATAAAGGTCCCTGTCTCATCCTTGCCTGACCATCCAAAAgtcccagtctgtttctgctttaTAGCCAACTGACTCCTTTGTTGTGATCTTGTCACGGTGAAGGTAAAGGATGTAGTGTTCTTGAATGCAGAAAGTCTGGCACCTAGGCTACTACACCACCCATGATCTTTCCTGGCTCATGGGACCAACTTTTACGGAGACTCGAGAGGGATCGCTCCAtttcataaaaaaataataaaaatatgtaactgcaaaaaacaacaacagcacaATACTTttctactgtgtatatatattttctagGGAATCCCGCTTGTTGCTTTTATCCCTCACTCCCAACCCTGCTGTTTGTCAATGTTGATGTTCATTCTTAATCTGCACTCGTTGTGTAAATAAACTGTATCCAGtcaga

Function

GO:

id name namespace
GO:0030036 actin cytoskeleton organization biological_process
GO:0003779 actin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1736608 lncRNA upstream 23466 12105557 ~ 12161243 (+) True LOC110527243
TU1736734 lncRNA upstream 95101 12089387 ~ 12089608 (+) True G1517206
TU1736732 lncRNA upstream 95799 12088670 ~ 12088910 (+) True G1517204
TU1736730 lncRNA upstream 98289 12085890 ~ 12086420 (+) True G1517202
TU1736595 lncRNA upstream 116475 12067384 ~ 12068234 (+) True G1517110
TU1736601 lncRNA downstream 31649 12245883 ~ 12246387 (+) True G1517116
TU1736798 lncRNA downstream 57935 12272169 ~ 12272799 (+) True G1517254
TU1736800 lncRNA downstream 71062 12285296 ~ 12285618 (+) True G1517256
TU1736832 lncRNA downstream 132212 12346446 ~ 12346957 (+) False G1517274
TU1736834 lncRNA downstream 132495 12346729 ~ 12346957 (+) False G1517274
XM_036951878.1 mRNA upstream 23437 12093902 ~ 12161272 (+) False LOC110527243
XM_036951870.1 mRNA upstream 103770 12069049 ~ 12080939 (+) False LOC110538823
XM_036951872.1 mRNA upstream 103770 12069050 ~ 12080939 (+) False LOC110538823
XM_036951871.1 mRNA upstream 103770 12069572 ~ 12080939 (+) True LOC110538823
XM_036951873.1 mRNA upstream 124695 12048979 ~ 12060014 (+) True dytn
XM_036951371.1 mRNA downstream 316 12214550 ~ 12216720 (+) True LOC118941035
XM_036951339.1 mRNA downstream 2480 12216714 ~ 12220754 (+) True LOC110527236
XM_036951333.1 mRNA downstream 11151 12225385 ~ 12229990 (+) False LOC110527239
XM_036951334.1 mRNA downstream 11151 12225385 ~ 12229990 (+) False LOC110527239
XM_036951332.1 mRNA downstream 11152 12225386 ~ 12229990 (+) True LOC110527239
TU1736637 other upstream 243604 11940062 ~ 11941105 (+) False G1517150
TU1736489 other upstream 540951 11642789 ~ 11643758 (+) True G1517019
TU1736485 other upstream 549730 11633067 ~ 11634979 (+) True G1517015
TU1735957 other upstream 1092155 11086085 ~ 11092554 (+) True LOC118941092
TU1735992 other upstream 1167620 11016765 ~ 11017089 (+) True G1516637
TU1736988 other downstream 619417 12833651 ~ 12872163 (+) True G1517414
TU1737033 other downstream 720420 12934654 ~ 12936278 (+) True G1517456
TU1737034 other downstream 723289 12937523 ~ 12942494 (+) True G1517457
TU1737133 other downstream 972867 13187101 ~ 13188080 (+) True G1517545
TU1739079 other downstream 2220528 14434762 ~ 14436120 (+) True G1519096

Expression Profile